miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 115519 0.67 0.833308
Target:  5'- ---aUGCuGGCCuc-GguGCCCCGGGCg -3'
miRNA:   3'- cucaACG-UCGGuguUguCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 92084 0.67 0.833308
Target:  5'- uGGGggGCGGCC----CGGCCUgGGGCu -3'
miRNA:   3'- -CUCaaCGUCGGuguuGUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155935 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 152857 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 18951 0.67 0.833308
Target:  5'- aGGGcaugUGguGCgC-CAGCGGCCCCuagagaGGGCg -3'
miRNA:   3'- -CUCa---ACguCG-GuGUUGUCGGGG------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 143624 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 43661 0.67 0.833308
Target:  5'- aGAGggGCccGGCuCGCAuucGCUCCAGGCc -3'
miRNA:   3'- -CUCaaCG--UCG-GUGUuguCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 64195 0.67 0.824882
Target:  5'- gGAGUUGCAagguGUCGCGG-AGCUCC-GGCa -3'
miRNA:   3'- -CUCAACGU----CGGUGUUgUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 170402 0.67 0.824882
Target:  5'- ---cUGUAG-UACAGCGGCCCCggucaauaAGGCa -3'
miRNA:   3'- cucaACGUCgGUGUUGUCGGGG--------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 158188 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 145875 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 36757 0.67 0.824882
Target:  5'- aGGGUUccGCAgGCCGCGuaaggggguGGCCCUAGGUg -3'
miRNA:   3'- -CUCAA--CGU-CGGUGUug-------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 3726 0.67 0.824882
Target:  5'- aGGGUcucugGgGGCCGCGuggcccuuCAGCCCgGGGUg -3'
miRNA:   3'- -CUCAa----CgUCGGUGUu-------GUCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 84962 0.67 0.824882
Target:  5'- gGGGggGCaaagucccgcaGGCCAUccaGGCCCCAGGg -3'
miRNA:   3'- -CUCaaCG-----------UCGGUGuugUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 50051 0.67 0.824882
Target:  5'- gGAGgcGCAGUC-CAGCAGgccCUCCAGGa -3'
miRNA:   3'- -CUCaaCGUCGGuGUUGUC---GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 53005 0.67 0.824882
Target:  5'- ----cGUGGCCGCGGgggucgaugacCAGCCUCGGGUg -3'
miRNA:   3'- cucaaCGUCGGUGUU-----------GUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 43384 0.67 0.824882
Target:  5'- cGGggGCAGCaGCGGCugccucuGCCCC-GGCu -3'
miRNA:   3'- cUCaaCGUCGgUGUUGu------CGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 40145 0.67 0.824882
Target:  5'- aGGGggGCuGGCCAUaccuggaguuGACGGCgaCCCGGGUg -3'
miRNA:   3'- -CUCaaCG-UCGGUG----------UUGUCG--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 142797 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.