miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 1143 0.66 0.857452
Target:  5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3'
miRNA:   3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 160991 0.66 0.857452
Target:  5'- aGAGUga-GGCCugAccuCAGCCCCAuGCc -3'
miRNA:   3'- -CUCAacgUCGGugUu--GUCGGGGUcCG- -5'
29042 3' -56.7 NC_006146.1 + 23619 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 163683 0.67 0.8496
Target:  5'- uAGUugUGCAGgCGCGugGGCCUUggugGGGCc -3'
miRNA:   3'- cUCA--ACGUCgGUGUugUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 33125 0.67 0.8496
Target:  5'- cGGGUUcGCcgGGCCGCuGCcccGCUCCGGGUg -3'
miRNA:   3'- -CUCAA-CG--UCGGUGuUGu--CGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155714 0.67 0.8496
Target:  5'- aGGUgaagGCGGCCGCGcaguCGGCCUuCAGcGCu -3'
miRNA:   3'- cUCAa---CGUCGGUGUu---GUCGGG-GUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 154245 0.67 0.8496
Target:  5'- -cGUUaGCcaGGCCGCugGugGGCCUCAGGUu -3'
miRNA:   3'- cuCAA-CG--UCGGUG--UugUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 114212 0.67 0.8496
Target:  5'- aGGUUGUccAGCagggcCAGCCCCAGGg -3'
miRNA:   3'- cUCAACG--UCGguguuGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 44760 0.67 0.8496
Target:  5'- uGGUUGUcggGGCC-CGGCGGgcggggaaCCCAGGCc -3'
miRNA:   3'- cUCAACG---UCGGuGUUGUCg-------GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 92700 0.67 0.8496
Target:  5'- gGAGg-GCAGUgACAGCGaCCCCucguGGCg -3'
miRNA:   3'- -CUCaaCGUCGgUGUUGUcGGGGu---CCG- -5'
29042 3' -56.7 NC_006146.1 + 73336 0.67 0.8496
Target:  5'- ---gUGCAGauuCGCaAACAGCCCCuucuuuaauAGGCa -3'
miRNA:   3'- cucaACGUCg--GUG-UUGUCGGGG---------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 55652 0.67 0.847206
Target:  5'- gGGGUgcaGCAGCCGgAGCcaggcggcguugaaGGCCagcaCGGGCa -3'
miRNA:   3'- -CUCAa--CGUCGGUgUUG--------------UCGGg---GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 15304 0.67 0.84155
Target:  5'- gGAGgaGgGGCCGgAGgcCAGCCCCGGuGUg -3'
miRNA:   3'- -CUCaaCgUCGGUgUU--GUCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 93396 0.67 0.84155
Target:  5'- uGGUUGCcgaagcagauGGCgACcuuguucaggGACAGCCCCuGGGCc -3'
miRNA:   3'- cUCAACG----------UCGgUG----------UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 162347 0.67 0.840734
Target:  5'- cGGGcUGCAGCUAUgAGCgccuuggagauggAGCCCCuuGGCg -3'
miRNA:   3'- -CUCaACGUCGGUG-UUG-------------UCGGGGu-CCG- -5'
29042 3' -56.7 NC_006146.1 + 152857 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 149779 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 143624 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 69830 0.67 0.833308
Target:  5'- ---gUGCuGCCccacaGCAugAGCCCguGGCc -3'
miRNA:   3'- cucaACGuCGG-----UGUugUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 87216 0.67 0.833308
Target:  5'- aGGUgGCGGCCGCAGCcaucaCCUGGGUg -3'
miRNA:   3'- cUCAaCGUCGGUGUUGucg--GGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.