miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 151884 0.66 0.872535
Target:  5'- ---cUGCccAGCCACc-CAGCcucgCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUGuuGUCG----GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 38810 0.66 0.871801
Target:  5'- gGGGUgcacaucUGCAGCCA-GGCccugAGCCUgGGGCa -3'
miRNA:   3'- -CUCA-------ACGUCGGUgUUG----UCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 164459 0.66 0.865099
Target:  5'- -uGUUGgGGCCcCAugGaCCCCAGGg -3'
miRNA:   3'- cuCAACgUCGGuGUugUcGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 13395 0.66 0.865099
Target:  5'- ----cGCGGCCACgGACuGCCucagCCAGGUc -3'
miRNA:   3'- cucaaCGUCGGUG-UUGuCGG----GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 42724 0.66 0.865099
Target:  5'- cGGGcugGCAGCCGCGGa---UCCGGGCg -3'
miRNA:   3'- -CUCaa-CGUCGGUGUUgucgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 129542 0.66 0.865099
Target:  5'- aGAGccaCGGCCACcACcgccaGGCCCUGGGCc -3'
miRNA:   3'- -CUCaacGUCGGUGuUG-----UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 138756 0.66 0.865099
Target:  5'- ----aGCGGCCuGCcACGGCCCU-GGCu -3'
miRNA:   3'- cucaaCGUCGG-UGuUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 53735 0.66 0.865099
Target:  5'- ----gGgAGCCGCGGCuGCgCCgGGGCg -3'
miRNA:   3'- cucaaCgUCGGUGUUGuCG-GGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 26697 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 129348 0.66 0.857452
Target:  5'- -cGgaGCGGCCGguucucgAGCAGCCUCAGGa -3'
miRNA:   3'- cuCaaCGUCGGUg------UUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 146796 0.66 0.857452
Target:  5'- cGGUgcCAGCCGCccucGACccgcGUCCCAGGCg -3'
miRNA:   3'- cUCAacGUCGGUG----UUGu---CGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 23619 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 3007 0.66 0.857452
Target:  5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3'
miRNA:   3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 1143 0.66 0.857452
Target:  5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3'
miRNA:   3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 160991 0.66 0.857452
Target:  5'- aGAGUga-GGCCugAccuCAGCCCCAuGCc -3'
miRNA:   3'- -CUCAacgUCGGugUu--GUCGGGGUcCG- -5'
29042 3' -56.7 NC_006146.1 + 146018 0.66 0.857452
Target:  5'- cGAGggGCAGg-GgGGCAGCUCCuGGCa -3'
miRNA:   3'- -CUCaaCGUCggUgUUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 156798 0.66 0.857452
Target:  5'- ----aGCAGCCcCGACAucccGCCCUGGGg -3'
miRNA:   3'- cucaaCGUCGGuGUUGU----CGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 14385 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 17463 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 20541 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.