miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 81974 0.74 0.416988
Target:  5'- uGGGgaGCcucagccucAGCCACAAgAGCCCCAGuGCc -3'
miRNA:   3'- -CUCaaCG---------UCGGUGUUgUCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 127443 0.74 0.416988
Target:  5'- cGAGgagGCuGCCGCuccagauguGGCGGCCCgCAGGCu -3'
miRNA:   3'- -CUCaa-CGuCGGUG---------UUGUCGGG-GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78772 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78622 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 102851 0.74 0.438378
Target:  5'- -uGUUgGCAGCCAgGGCAGCCgccaccuggucguggCCGGGCc -3'
miRNA:   3'- cuCAA-CGUCGGUgUUGUCGG---------------GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 128274 0.74 0.443824
Target:  5'- uGAGgcccaCGGCgGCGGCcgAGCCCCAGGCu -3'
miRNA:   3'- -CUCaac--GUCGgUGUUG--UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 80980 0.74 0.452982
Target:  5'- --uUUGCAGCCAacGCAGCUCC-GGCg -3'
miRNA:   3'- cucAACGUCGGUguUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 82092 0.73 0.490603
Target:  5'- cAGgccCAGCCACAACAuGCCCagCAGGCu -3'
miRNA:   3'- cUCaacGUCGGUGUUGU-CGGG--GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78802 0.73 0.490603
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCn -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 40432 0.73 0.490603
Target:  5'- ----cGgGGCgGCAGCGGCCCCguAGGCg -3'
miRNA:   3'- cucaaCgUCGgUGUUGUCGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 68195 0.73 0.500236
Target:  5'- ----cGCGGgCGCAGCGGCUCCGGGa -3'
miRNA:   3'- cucaaCGUCgGUGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 155482 0.73 0.509952
Target:  5'- ---cUGCAGCCGgGcCAGCCCCucugAGGCc -3'
miRNA:   3'- cucaACGUCGGUgUuGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 8568 0.73 0.509952
Target:  5'- uAGcUGCAGCCcggGCuGCAGCaCCAGGCa -3'
miRNA:   3'- cUCaACGUCGG---UGuUGUCGgGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 12045 0.73 0.509952
Target:  5'- cGGG-UGCGGCCAC--CAGCCCCAuGuGCu -3'
miRNA:   3'- -CUCaACGUCGGUGuuGUCGGGGU-C-CG- -5'
29042 3' -56.7 NC_006146.1 + 137681 0.73 0.509952
Target:  5'- ----gGCGGCCACccGGCuGCCCCGGaGCa -3'
miRNA:   3'- cucaaCGUCGGUG--UUGuCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 137559 0.73 0.509952
Target:  5'- ----gGCGGCCACccGGCuGCCCCGGaGCa -3'
miRNA:   3'- cucaaCGUCGGUG--UUGuCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 149805 0.73 0.509952
Target:  5'- gGAGaugGgGGCCACAAacaGGCUCCGGGUg -3'
miRNA:   3'- -CUCaa-CgUCGGUGUUg--UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 137804 0.72 0.529612
Target:  5'- ----gGCGGCCACccGGCuGCCCCAGaGCc -3'
miRNA:   3'- cucaaCGUCGGUG--UUGuCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 132797 0.72 0.529612
Target:  5'- ----cGCAGCUgcuCAGCAGCUgCAGGCg -3'
miRNA:   3'- cucaaCGUCGGu--GUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 160152 0.72 0.549543
Target:  5'- aAGUagaUGUAGCCGC-AUGGCCCC-GGCu -3'
miRNA:   3'- cUCA---ACGUCGGUGuUGUCGGGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.