miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 128274 0.74 0.443824
Target:  5'- uGAGgcccaCGGCgGCGGCcgAGCCCCAGGCu -3'
miRNA:   3'- -CUCaac--GUCGgUGUUG--UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78772 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78677 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82196 0.83 0.128407
Target:  5'- gGAGccGCAGCCACAACAGUCCCAagacccacuGGCu -3'
miRNA:   3'- -CUCaaCGUCGGUGUUGUCGGGGU---------CCG- -5'
29042 3' -56.7 NC_006146.1 + 22305 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 155482 0.73 0.509952
Target:  5'- ---cUGCAGCCGgGcCAGCCCCucugAGGCc -3'
miRNA:   3'- cucaACGUCGGUgUuGUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 27480 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 67994 0.85 0.096158
Target:  5'- uGGGgcGCAGCCACGccacACGGCCCCuGGCg -3'
miRNA:   3'- -CUCaaCGUCGGUGU----UGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 149805 0.73 0.509952
Target:  5'- gGAGaugGgGGCCACAAacaGGCUCCGGGUg -3'
miRNA:   3'- -CUCaa-CgUCGGUGUUg--UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82304 0.91 0.03945
Target:  5'- gGAGUcGCAGCCACAACAGCCCCAGc- -3'
miRNA:   3'- -CUCAaCGUCGGUGUUGUCGGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 78622 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82092 0.73 0.490603
Target:  5'- cAGgccCAGCCACAACAuGCCCagCAGGCu -3'
miRNA:   3'- cUCaacGUCGGUGUUGU-CGGG--GUCCG- -5'
29042 3' -56.7 NC_006146.1 + 18246 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 78737 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78576 0.77 0.318031
Target:  5'- cAGcUGCcccaGGCCgggcccgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cUCaACG----UCGG--------------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78830 0.8 0.188512
Target:  5'- cGGGccGCcccCCGCAGCAGCCCCAGGCc -3'
miRNA:   3'- -CUCaaCGuc-GGUGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 95349 0.7 0.660763
Target:  5'- ----cGCGGCCACggUuguGGCCCCcguuaccAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuuG---UCGGGG-------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 25383 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 13071 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 132797 0.72 0.529612
Target:  5'- ----cGCAGCUgcuCAGCAGCUgCAGGCg -3'
miRNA:   3'- cucaaCGUCGGu--GUUGUCGGgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.