miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 16149 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 16707 0.69 0.71247
Target:  5'- ----cGCAGguCCACGAC-GCCCCGGGg -3'
miRNA:   3'- cucaaCGUC--GGUGUUGuCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 17463 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 18246 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 18951 0.67 0.833308
Target:  5'- aGGGcaugUGguGCgC-CAGCGGCCCCuagagaGGGCg -3'
miRNA:   3'- -CUCa---ACguCG-GuGUUGUCGGGG------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 19227 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 20043 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 20541 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 21324 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 22305 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 23121 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 23619 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 24048 0.72 0.569701
Target:  5'- gGGGUgacGCGGCCcCGAgcCAGgCCCGGGCu -3'
miRNA:   3'- -CUCAa--CGUCGGuGUU--GUCgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 24402 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 25383 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 26199 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 26697 0.66 0.857452
Target:  5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3'
miRNA:   3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5'
29042 3' -56.7 NC_006146.1 + 27480 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 28461 0.7 0.640257
Target:  5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3'
miRNA:   3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 28740 0.68 0.780271
Target:  5'- ----aGCAGCCACAuCAuCCCCAaagGGCc -3'
miRNA:   3'- cucaaCGUCGGUGUuGUcGGGGU---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.