Results 1 - 20 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 212 | 0.68 | 0.770912 |
Target: 5'- ---gUGCccCCGCGACGGUCCCcgGGGCg -3' miRNA: 3'- cucaACGucGGUGUUGUCGGGG--UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 831 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 1143 | 0.66 | 0.857452 |
Target: 5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3' miRNA: 3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 1763 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 2075 | 0.66 | 0.857452 |
Target: 5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3' miRNA: 3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 2286 | 0.66 | 0.879754 |
Target: 5'- uGAGgucaccGgAGCCAggcccuccuucCGACAGUUCCAGGCc -3' miRNA: 3'- -CUCaa----CgUCGGU-----------GUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 2695 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 3007 | 0.66 | 0.857452 |
Target: 5'- ---gUGCccCCGCGAgGGuCCCCGGGCc -3' miRNA: 3'- cucaACGucGGUGUUgUC-GGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 3627 | 0.7 | 0.692339 |
Target: 5'- ----cGcCGGCCAUccccacgcGCGGCCCCGGGCc -3' miRNA: 3'- cucaaC-GUCGGUGu-------UGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 3726 | 0.67 | 0.824882 |
Target: 5'- aGGGUcucugGgGGCCGCGuggcccuuCAGCCCgGGGUg -3' miRNA: 3'- -CUCAa----CgUCGGUGUu-------GUCGGGgUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 4366 | 0.68 | 0.751831 |
Target: 5'- ----cGUGGCCACGgccccGCGGgcuCCCCAGGCc -3' miRNA: 3'- cucaaCGUCGGUGU-----UGUC---GGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 4964 | 0.69 | 0.722436 |
Target: 5'- ----aGgGGCCACGAgAGCCuCCuGGCg -3' miRNA: 3'- cucaaCgUCGGUGUUgUCGG-GGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 8568 | 0.73 | 0.509952 |
Target: 5'- uAGcUGCAGCCcggGCuGCAGCaCCAGGCa -3' miRNA: 3'- cUCaACGUCGG---UGuUGUCGgGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 12045 | 0.73 | 0.509952 |
Target: 5'- cGGG-UGCGGCCAC--CAGCCCCAuGuGCu -3' miRNA: 3'- -CUCaACGUCGGUGuuGUCGGGGU-C-CG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 13071 | 0.7 | 0.640257 |
Target: 5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3' miRNA: 3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 13395 | 0.66 | 0.865099 |
Target: 5'- ----cGCGGCCACgGACuGCCucagCCAGGUc -3' miRNA: 3'- cucaaCGUCGGUG-UUGuCGG----GGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 13888 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 14385 | 0.66 | 0.857452 |
Target: 5'- ---cUGUcuagGGCCGggagaGGCAGCCCCgAGGCg -3' miRNA: 3'- cucaACG----UCGGUg----UUGUCGGGG-UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 15168 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 15304 | 0.67 | 0.84155 |
Target: 5'- gGAGgaGgGGCCGgAGgcCAGCCCCGGuGUg -3' miRNA: 3'- -CUCaaCgUCGGUgUU--GUCGGGGUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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