miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 170752 0.7 0.692339
Target:  5'- ---gUGCAGaaaCCACgGGCAGCCauCCAGGCg -3'
miRNA:   3'- cucaACGUC---GGUG-UUGUCGG--GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 170402 0.67 0.824882
Target:  5'- ---cUGUAG-UACAGCGGCCCCggucaauaAGGCa -3'
miRNA:   3'- cucaACGUCgGUGUUGUCGGGG--------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 164459 0.66 0.865099
Target:  5'- -uGUUGgGGCCcCAugGaCCCCAGGg -3'
miRNA:   3'- cuCAACgUCGGuGUugUcGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 163683 0.67 0.8496
Target:  5'- uAGUugUGCAGgCGCGugGGCCUUggugGGGCc -3'
miRNA:   3'- cUCA--ACGUCgGUGUugUCGGGG----UCCG- -5'
29042 3' -56.7 NC_006146.1 + 162347 0.67 0.840734
Target:  5'- cGGGcUGCAGCUAUgAGCgccuuggagauggAGCCCCuuGGCg -3'
miRNA:   3'- -CUCaACGUCGGUG-UUG-------------UCGGGGu-CCG- -5'
29042 3' -56.7 NC_006146.1 + 160991 0.66 0.857452
Target:  5'- aGAGUga-GGCCugAccuCAGCCCCAuGCc -3'
miRNA:   3'- -CUCAacgUCGGugUu--GUCGGGGUcCG- -5'
29042 3' -56.7 NC_006146.1 + 160152 0.72 0.549543
Target:  5'- aAGUagaUGUAGCCGC-AUGGCCCC-GGCu -3'
miRNA:   3'- cUCA---ACGUCGGUGuUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 158439 0.7 0.692339
Target:  5'- aGAGggGCccgagGGCCugAAaGGCCCCGGcGCc -3'
miRNA:   3'- -CUCaaCG-----UCGGugUUgUCGGGGUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 158188 0.67 0.824882
Target:  5'- --cUUGCuGGCCcCAAUGGCCgCGGGCc -3'
miRNA:   3'- cucAACG-UCGGuGUUGUCGGgGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 158040 0.71 0.600253
Target:  5'- ---cUGCccAGCCACccAGCcucGCCCCAGGCg -3'
miRNA:   3'- cucaACG--UCGGUG--UUGu--CGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 157494 0.66 0.879754
Target:  5'- cGGGccUUGCAGaCCugGcugagGCAGUCCguGGCc -3'
miRNA:   3'- -CUC--AACGUC-GGugU-----UGUCGGGguCCG- -5'
29042 3' -56.7 NC_006146.1 + 156798 0.66 0.857452
Target:  5'- ----aGCAGCCcCGACAucccGCCCUGGGg -3'
miRNA:   3'- cucaaCGUCGGuGUUGU----CGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 156697 0.66 0.857452
Target:  5'- -cGUUGCGcGCCACcGCcuccccguccaGGCUCCGGGg -3'
miRNA:   3'- cuCAACGU-CGGUGuUG-----------UCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 156588 0.67 0.833308
Target:  5'- uGAGUUcuccaGCAGgUGCGcCAGCUCCAGGg -3'
miRNA:   3'- -CUCAA-----CGUCgGUGUuGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 156565 0.67 0.824882
Target:  5'- ----aGCagGGCCGCAACGGCCCU--GCg -3'
miRNA:   3'- cucaaCG--UCGGUGUUGUCGGGGucCG- -5'
29042 3' -56.7 NC_006146.1 + 156356 0.77 0.320222
Target:  5'- ----aGCGGCC-CAGCAGCUCCAGGg -3'
miRNA:   3'- cucaaCGUCGGuGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 156050 0.68 0.751831
Target:  5'- uGGcUGCccccucGGCCucCcGCGGCCCCGGGCc -3'
miRNA:   3'- cUCaACG------UCGGu-GuUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155935 0.67 0.833308
Target:  5'- -uGgcGgAGCCgGCGAUgacgguggagguGGCCCCGGGCg -3'
miRNA:   3'- cuCaaCgUCGG-UGUUG------------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 155714 0.67 0.8496
Target:  5'- aGGUgaagGCGGCCGCGcaguCGGCCUuCAGcGCu -3'
miRNA:   3'- cUCAa---CGUCGGUGUu---GUCGGG-GUC-CG- -5'
29042 3' -56.7 NC_006146.1 + 155482 0.73 0.509952
Target:  5'- ---cUGCAGCCGgGcCAGCCCCucugAGGCc -3'
miRNA:   3'- cucaACGUCGGUgUuGUCGGGG----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.