Results 1 - 20 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 82031 | 1.1 | 0.001919 |
Target: 5'- gGAGUUGCAGCCACAACAGCCCCAGGCc -3' miRNA: 3'- -CUCAACGUCGGUGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82304 | 0.91 | 0.03945 |
Target: 5'- gGAGUcGCAGCCACAACAGCCCCAGc- -3' miRNA: 3'- -CUCAaCGUCGGUGUUGUCGGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 67994 | 0.85 | 0.096158 |
Target: 5'- uGGGgcGCAGCCACGccacACGGCCCCuGGCg -3' miRNA: 3'- -CUCaaCGUCGGUGU----UGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82196 | 0.83 | 0.128407 |
Target: 5'- gGAGccGCAGCCACAACAGUCCCAagacccacuGGCu -3' miRNA: 3'- -CUCaaCGUCGGUGUUGUCGGGGU---------CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78830 | 0.8 | 0.188512 |
Target: 5'- cGGGccGCcccCCGCAGCAGCCCCAGGCc -3' miRNA: 3'- -CUCaaCGuc-GGUGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 106593 | 0.8 | 0.208288 |
Target: 5'- ---cUGCcGCCAguACGGCCCCAGGCc -3' miRNA: 3'- cucaACGuCGGUguUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 46711 | 0.79 | 0.224273 |
Target: 5'- aGAGU--CGGCCGCGGCGGCUCCgAGGCg -3' miRNA: 3'- -CUCAacGUCGGUGUUGUCGGGG-UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78576 | 0.77 | 0.318031 |
Target: 5'- cAGcUGCcccaGGCCgggcccgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cUCaACG----UCGG--------------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 156356 | 0.77 | 0.320222 |
Target: 5'- ----aGCGGCC-CAGCAGCUCCAGGg -3' miRNA: 3'- cucaaCGUCGGuGUUGUCGGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 99677 | 0.76 | 0.33512 |
Target: 5'- gGAGUUGacCAGCCAgGACucgaAGCCCCcGGCg -3' miRNA: 3'- -CUCAAC--GUCGGUgUUG----UCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 137486 | 0.76 | 0.342756 |
Target: 5'- cGAGcgGCGG-CGCAGCGGUgCCCAGGCg -3' miRNA: 3'- -CUCaaCGUCgGUGUUGUCG-GGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 15168 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 24402 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 27480 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78677 | 0.76 | 0.358402 |
Target: 5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 18246 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 21324 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78885 | 0.76 | 0.358402 |
Target: 5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78737 | 0.76 | 0.358402 |
Target: 5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 68246 | 0.75 | 0.398803 |
Target: 5'- gGAGgcGCGGCUgACAGagacugcCAGCCCCGGGUg -3' miRNA: 3'- -CUCaaCGUCGG-UGUU-------GUCGGGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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