miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 82031 1.1 0.001919
Target:  5'- gGAGUUGCAGCCACAACAGCCCCAGGCc -3'
miRNA:   3'- -CUCAACGUCGGUGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 27480 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 78772 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 56518 0.66 0.889487
Target:  5'- gGGGUcGUcgccGGCCAuCAGCAGCUgacgcgucacgcgggCCAGGCc -3'
miRNA:   3'- -CUCAaCG----UCGGU-GUUGUCGG---------------GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78830 0.8 0.188512
Target:  5'- cGGGccGCcccCCGCAGCAGCCCCAGGCc -3'
miRNA:   3'- -CUCaaCGuc-GGUGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 106593 0.8 0.208288
Target:  5'- ---cUGCcGCCAguACGGCCCCAGGCc -3'
miRNA:   3'- cucaACGuCGGUguUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 78576 0.77 0.318031
Target:  5'- cAGcUGCcccaGGCCgggcccgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cUCaACG----UCGG--------------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 156356 0.77 0.320222
Target:  5'- ----aGCGGCC-CAGCAGCUCCAGGg -3'
miRNA:   3'- cucaaCGUCGGuGUUGUCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 78737 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 24402 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 15168 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 78677 0.76 0.358402
Target:  5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82304 0.91 0.03945
Target:  5'- gGAGUcGCAGCCACAACAGCCCCAGc- -3'
miRNA:   3'- -CUCAaCGUCGGUGUUGUCGGGGUCcg -5'
29042 3' -56.7 NC_006146.1 + 18246 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 67994 0.85 0.096158
Target:  5'- uGGGgcGCAGCCACGccacACGGCCCCuGGCg -3'
miRNA:   3'- -CUCaaCGUCGGUGU----UGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 99677 0.76 0.33512
Target:  5'- gGAGUUGacCAGCCAgGACucgaAGCCCCcGGCg -3'
miRNA:   3'- -CUCAAC--GUCGGUgUUG----UCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 21324 0.76 0.358402
Target:  5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3'
miRNA:   3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5'
29042 3' -56.7 NC_006146.1 + 78622 0.74 0.416988
Target:  5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3'
miRNA:   3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 82196 0.83 0.128407
Target:  5'- gGAGccGCAGCCACAACAGUCCCAagacccacuGGCu -3'
miRNA:   3'- -CUCaaCGUCGGUGUUGUCGGGGU---------CCG- -5'
29042 3' -56.7 NC_006146.1 + 46711 0.79 0.224273
Target:  5'- aGAGU--CGGCCGCGGCGGCUCCgAGGCg -3'
miRNA:   3'- -CUCAacGUCGGUGUUGUCGGGG-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.