miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 3' -56.7 NC_006146.1 + 29277 0.69 0.722436
Target:  5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 30200 0.67 0.811036
Target:  5'- uGAGgaGCaggAGCCAgAAcCAGCCCCcacuaugguagagaaGGGCa -3'
miRNA:   3'- -CUCaaCG---UCGGUgUU-GUCGGGG---------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 31652 0.68 0.770912
Target:  5'- ----aGCAGUCACAaacACA-CCUCAGGCa -3'
miRNA:   3'- cucaaCGUCGGUGU---UGUcGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 33125 0.67 0.8496
Target:  5'- cGGGUUcGCcgGGCCGCuGCcccGCUCCGGGUg -3'
miRNA:   3'- -CUCAA-CG--UCGGUGuUGu--CGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 34094 0.71 0.600253
Target:  5'- cGGGggGCAGCCGCGACccagcgcGCCCCguucacGGGg -3'
miRNA:   3'- -CUCaaCGUCGGUGUUGu------CGGGG------UCCg -5'
29042 3' -56.7 NC_006146.1 + 36757 0.67 0.824882
Target:  5'- aGGGUUccGCAgGCCGCGuaaggggguGGCCCUAGGUg -3'
miRNA:   3'- -CUCAA--CGU-CGGUGUug-------UCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 38810 0.66 0.871801
Target:  5'- gGGGUgcacaucUGCAGCCA-GGCccugAGCCUgGGGCa -3'
miRNA:   3'- -CUCA-------ACGUCGGUgUUG----UCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 39821 0.71 0.631017
Target:  5'- -cGUUGaCGGCC-CGGCGGCCUC-GGCc -3'
miRNA:   3'- cuCAAC-GUCGGuGUUGUCGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 39994 0.68 0.74893
Target:  5'- uGAGUggGUGGCC-CGGCAGCCUUugaccggucagacgGGGCa -3'
miRNA:   3'- -CUCAa-CGUCGGuGUUGUCGGGG--------------UCCG- -5'
29042 3' -56.7 NC_006146.1 + 40145 0.67 0.824882
Target:  5'- aGGGggGCuGGCCAUaccuggaguuGACGGCgaCCCGGGUg -3'
miRNA:   3'- -CUCaaCG-UCGGUG----------UUGUCG--GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 40432 0.73 0.490603
Target:  5'- ----cGgGGCgGCAGCGGCCCCguAGGCg -3'
miRNA:   3'- cucaaCgUCGgUGUUGUCGGGG--UCCG- -5'
29042 3' -56.7 NC_006146.1 + 40984 0.69 0.722436
Target:  5'- ---gUGguGCCGCGccgGC-GCCCCAGGg -3'
miRNA:   3'- cucaACguCGGUGU---UGuCGGGGUCCg -5'
29042 3' -56.7 NC_006146.1 + 42724 0.66 0.865099
Target:  5'- cGGGcugGCAGCCGCGGa---UCCGGGCg -3'
miRNA:   3'- -CUCaa-CGUCGGUGUUgucgGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 42822 0.66 0.886062
Target:  5'- aGAGcgUGUagaccaggaucagGGCCuCGAgGGCCgCCAGGCc -3'
miRNA:   3'- -CUCa-ACG-------------UCGGuGUUgUCGG-GGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 43325 0.66 0.857452
Target:  5'- -cGgcGCGGCCuCGGCcGCCCaGGGCc -3'
miRNA:   3'- cuCaaCGUCGGuGUUGuCGGGgUCCG- -5'
29042 3' -56.7 NC_006146.1 + 43384 0.67 0.824882
Target:  5'- cGGggGCAGCaGCGGCugccucuGCCCC-GGCu -3'
miRNA:   3'- cUCaaCGUCGgUGUUGu------CGGGGuCCG- -5'
29042 3' -56.7 NC_006146.1 + 43661 0.67 0.833308
Target:  5'- aGAGggGCccGGCuCGCAuucGCUCCAGGCc -3'
miRNA:   3'- -CUCaaCG--UCG-GUGUuguCGGGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 44188 0.68 0.761429
Target:  5'- aGAGgcacgcGCGGCUGCAcuGCAGCCggGGGCg -3'
miRNA:   3'- -CUCaa----CGUCGGUGU--UGUCGGggUCCG- -5'
29042 3' -56.7 NC_006146.1 + 44760 0.67 0.8496
Target:  5'- uGGUUGUcggGGCC-CGGCGGgcggggaaCCCAGGCc -3'
miRNA:   3'- cUCAACG---UCGGuGUUGUCg-------GGGUCCG- -5'
29042 3' -56.7 NC_006146.1 + 46356 0.67 0.816279
Target:  5'- uGAGgaccGCGuCCgACAGCAGCuccCCCAGGCc -3'
miRNA:   3'- -CUCaa--CGUcGG-UGUUGUCG---GGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.