Results 41 - 60 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 3' | -56.7 | NC_006146.1 | + | 19227 | 0.7 | 0.640257 |
Target: 5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3' miRNA: 3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 27480 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 67994 | 0.85 | 0.096158 |
Target: 5'- uGGGgcGCAGCCACGccacACGGCCCCuGGCg -3' miRNA: 3'- -CUCaaCGUCGGUGU----UGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 16149 | 0.7 | 0.640257 |
Target: 5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3' miRNA: 3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 82304 | 0.91 | 0.03945 |
Target: 5'- gGAGUcGCAGCCACAACAGCCCCAGc- -3' miRNA: 3'- -CUCAaCGUCGGUGUUGUCGGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 156050 | 0.68 | 0.751831 |
Target: 5'- uGGcUGCccccucGGCCucCcGCGGCCCCGGGCc -3' miRNA: 3'- cUCaACG------UCGGu-GuUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78830 | 0.8 | 0.188512 |
Target: 5'- cGGGccGCcccCCGCAGCAGCCCCAGGCc -3' miRNA: 3'- -CUCaaCGuc-GGUGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 39994 | 0.68 | 0.74893 |
Target: 5'- uGAGUggGUGGCC-CGGCAGCCUUugaccggucagacgGGGCa -3' miRNA: 3'- -CUCAa-CGUCGGuGUUGUCGGGG--------------UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 101582 | 0.69 | 0.742126 |
Target: 5'- gGAGUUGgAGCCaACGACgAGgCCCAGa- -3' miRNA: 3'- -CUCAACgUCGG-UGUUG-UCgGGGUCcg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 13888 | 0.69 | 0.722436 |
Target: 5'- ----cGCAGCCGCccagucuCuGCCuCCAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuu-----GuCGG-GGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 74894 | 0.69 | 0.702434 |
Target: 5'- uAGUUucaGCGGUCGaGAUcccaaGGCCCCAGGCa -3' miRNA: 3'- cUCAA---CGUCGGUgUUG-----UCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 95349 | 0.7 | 0.660763 |
Target: 5'- ----cGCGGCCACggUuguGGCCCCcguuaccAGGCa -3' miRNA: 3'- cucaaCGUCGGUGuuG---UCGGGG-------UCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 25383 | 0.7 | 0.640257 |
Target: 5'- ----gGCGGCCGCccucagucccccaGACAGaCCCCAGGg -3' miRNA: 3'- cucaaCGUCGGUG-------------UUGUC-GGGGUCCg -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 160152 | 0.72 | 0.549543 |
Target: 5'- aAGUagaUGUAGCCGC-AUGGCCCC-GGCu -3' miRNA: 3'- cUCA---ACGUCGGUGuUGUCGGGGuCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 149805 | 0.73 | 0.509952 |
Target: 5'- gGAGaugGgGGCCACAAacaGGCUCCGGGUg -3' miRNA: 3'- -CUCaa-CgUCGGUGUUg--UCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 128274 | 0.74 | 0.443824 |
Target: 5'- uGAGgcccaCGGCgGCGGCcgAGCCCCAGGCu -3' miRNA: 3'- -CUCaac--GUCGgUGUUG--UCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78772 | 0.74 | 0.416988 |
Target: 5'- ----gGCccGCCccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCGu-CGG-----UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 18246 | 0.76 | 0.358402 |
Target: 5'- aAGgcGCAGgCACAACAGCCCaaccGGCg -3' miRNA: 3'- cUCaaCGUCgGUGUUGUCGGGgu--CCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78737 | 0.76 | 0.358402 |
Target: 5'- ----gGCcgGGCCcgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cucaaCG--UCGG---------UGUUGUCGGGGUCCG- -5' |
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29042 | 3' | -56.7 | NC_006146.1 | + | 78576 | 0.77 | 0.318031 |
Target: 5'- cAGcUGCcccaGGCCgggcccgccccccaGCAGCAGCCCCAGGCc -3' miRNA: 3'- cUCaACG----UCGG--------------UGUUGUCGGGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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