miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 76855 0.68 0.868077
Target:  5'- -aACgaGGGAUACGcGGcGGCgCUCGGGg -3'
miRNA:   3'- gaUGgaCCCUAUGU-CCcUCG-GAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 76890 0.68 0.852899
Target:  5'- cCUGCC-GGGccGCAcguGGGAGCCagAGGu -3'
miRNA:   3'- -GAUGGaCCCuaUGU---CCCUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 81854 0.77 0.365876
Target:  5'- aUACCcGGGcUACuGGGAGCCUCGGc -3'
miRNA:   3'- gAUGGaCCCuAUGuCCCUCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 81908 0.67 0.895886
Target:  5'- gUGCCaaacAUAUGGGGAGCCUCAGc -3'
miRNA:   3'- gAUGGacccUAUGUCCCUCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 82069 1.1 0.003145
Target:  5'- cCUACCUGGGAUACAGGGAGCCUCAGGc -3'
miRNA:   3'- -GAUGGACCCUAUGUCCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 82181 0.77 0.365876
Target:  5'- aUACCUGGauUACAGGGAGCCgCAGc -3'
miRNA:   3'- gAUGGACCcuAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 82289 0.84 0.163075
Target:  5'- aUACUUGGGAUACAGGGAGUCgCAGc -3'
miRNA:   3'- gAUGGACCCUAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 82389 0.68 0.852899
Target:  5'- -cACCcGGGuUACAGGGAgauacaGCCcCAGGc -3'
miRNA:   3'- gaUGGaCCCuAUGUCCCU------CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 86478 0.67 0.881723
Target:  5'- -aGCCUGGGcuUugAGGGgcagcugGGCCUUgAGGg -3'
miRNA:   3'- gaUGGACCCu-AugUCCC-------UCGGAG-UCC- -5'
29042 5' -55.7 NC_006146.1 + 88288 0.71 0.678182
Target:  5'- -gGCCUGGGAUAU--GGAGCCcaagUAGGc -3'
miRNA:   3'- gaUGGACCCUAUGucCCUCGGa---GUCC- -5'
29042 5' -55.7 NC_006146.1 + 89350 0.66 0.930764
Target:  5'- aCUACgaGGaGGcUGCAGuGGAGuCCUCGGa -3'
miRNA:   3'- -GAUGgaCC-CU-AUGUC-CCUC-GGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 89705 0.75 0.479201
Target:  5'- -gGCCUGGGAUACAcGGGuccgGGCCUugaauccagacCAGGu -3'
miRNA:   3'- gaUGGACCCUAUGU-CCC----UCGGA-----------GUCC- -5'
29042 5' -55.7 NC_006146.1 + 90178 0.67 0.90228
Target:  5'- -gGCCgcggcagGGGAgguagUGCAGGGGGCagaGGGg -3'
miRNA:   3'- gaUGGa------CCCU-----AUGUCCCUCGgagUCC- -5'
29042 5' -55.7 NC_006146.1 + 92008 0.68 0.852899
Target:  5'- -gGCCUGGGGcugcUGCuGGGgggcgggcccGGCCUgGGGc -3'
miRNA:   3'- gaUGGACCCU----AUGuCCC----------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 92068 0.68 0.84501
Target:  5'- -gGCCUGGGGcugcUGCuGGGgggcggcccGGCCUgGGGc -3'
miRNA:   3'- gaUGGACCCU----AUGuCCC---------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 92127 0.68 0.852899
Target:  5'- -gGCCUGGGGcugcUGCuGGGgggcgggcccGGCCUgGGGc -3'
miRNA:   3'- gaUGGACCCU----AUGuCCC----------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 92187 0.68 0.852899
Target:  5'- -gGCCUGGGGcugcUGCuGGGgggcgggcccGGCCUgGGGc -3'
miRNA:   3'- gaUGGACCCU----AUGuCCC----------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 92225 0.67 0.908445
Target:  5'- gCUGCugCUGGGggGCGGGcccGGCCUguGGc -3'
miRNA:   3'- -GAUG--GACCCuaUGUCCc--UCGGAguCC- -5'
29042 5' -55.7 NC_006146.1 + 92277 0.68 0.852899
Target:  5'- -gGCCUGGGGcugcUGCuGGGgggcgggcccGGCCUgGGGc -3'
miRNA:   3'- gaUGGACCCU----AUGuCCC----------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 92315 0.67 0.889265
Target:  5'- gCUGCugCUGGGggGCGGGcccGGCCUgGGGc -3'
miRNA:   3'- -GAUG--GACCCuaUGUCCc--UCGGAgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.