miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 38023 0.71 0.708222
Target:  5'- -aACCUGGGAUuuguugauGCAgaccucacaguGGGAGCCcagagUCAGGc -3'
miRNA:   3'- gaUGGACCCUA--------UGU-----------CCCUCGG-----AGUCC- -5'
29042 5' -55.7 NC_006146.1 + 40008 0.68 0.868077
Target:  5'- -gGCCggugUGGGcguaGCAGGGGGCCUgcUGGGg -3'
miRNA:   3'- gaUGG----ACCCua--UGUCCCUCGGA--GUCC- -5'
29042 5' -55.7 NC_006146.1 + 41067 0.74 0.546888
Target:  5'- -gGCCUcGGGGUGgAGGGAGgC-CAGGg -3'
miRNA:   3'- gaUGGA-CCCUAUgUCCCUCgGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 41494 0.67 0.885184
Target:  5'- -gGCCuUGGGGUgcGCGGGGAcgacgcccggcugacGCC-CGGGa -3'
miRNA:   3'- gaUGG-ACCCUA--UGUCCCU---------------CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 44946 0.72 0.627479
Target:  5'- -gGCCaGGGGcGCGGGGAGgCCcCGGGg -3'
miRNA:   3'- gaUGGaCCCUaUGUCCCUC-GGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 47395 0.73 0.617317
Target:  5'- -cGCCUGGGGUcgaccguggcCAGGGccAGCCUCAGc -3'
miRNA:   3'- gaUGGACCCUAu---------GUCCC--UCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 47512 0.68 0.875356
Target:  5'- -gGCCgGGGAcUACAGcGGcAGUgUCGGGg -3'
miRNA:   3'- gaUGGaCCCU-AUGUC-CC-UCGgAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 48584 0.67 0.90228
Target:  5'- -gGCCUcgGGGGU-CAGGGAGgCCagaAGGg -3'
miRNA:   3'- gaUGGA--CCCUAuGUCCCUC-GGag-UCC- -5'
29042 5' -55.7 NC_006146.1 + 48917 0.69 0.828669
Target:  5'- gUGCUgaagGGGAaggagguuugUGuCGGGGAccaGCCUCAGGg -3'
miRNA:   3'- gAUGGa---CCCU----------AU-GUCCCU---CGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 48995 0.67 0.88242
Target:  5'- -gACCUGGGAgGCuGGGgcguugcccAGCUUgGGGa -3'
miRNA:   3'- gaUGGACCCUaUGuCCC---------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 51576 0.7 0.76634
Target:  5'- -cGCCgccGGGAgggGCccgGGGGAGCCagAGGg -3'
miRNA:   3'- gaUGGa--CCCUa--UG---UCCCUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 51829 0.66 0.935755
Target:  5'- --cCCgGGGcgGCguggAGGGGGgCUCGGGg -3'
miRNA:   3'- gauGGaCCCuaUG----UCCCUCgGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 52996 0.66 0.920075
Target:  5'- cCUGCCggccGuGGccGCGGGGgucgaugaccAGCCUCGGGu -3'
miRNA:   3'- -GAUGGa---C-CCuaUGUCCC----------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 53460 0.7 0.76634
Target:  5'- uCUGCCcGGGAgGCGcGGGuGCCUCGucGGu -3'
miRNA:   3'- -GAUGGaCCCUaUGU-CCCuCGGAGU--CC- -5'
29042 5' -55.7 NC_006146.1 + 58179 0.67 0.90228
Target:  5'- cCUGCCUG---UACAcGG-GCCUCAGGg -3'
miRNA:   3'- -GAUGGACccuAUGUcCCuCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 59116 0.66 0.925537
Target:  5'- aUGCCaGGGG---AGGGAGCUaUAGGg -3'
miRNA:   3'- gAUGGaCCCUaugUCCCUCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 65204 0.68 0.836931
Target:  5'- -cGCuCUGGGGgccCuGGGAGCC-CGGGc -3'
miRNA:   3'- gaUG-GACCCUau-GuCCCUCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 70699 0.71 0.678182
Target:  5'- uCUGCgCUGGGA-AC-GGGAGC-UCAGGa -3'
miRNA:   3'- -GAUG-GACCCUaUGuCCCUCGgAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 71246 0.67 0.889265
Target:  5'- aCU-CCUGGGGccugGCGGGGggcGGCCUCu-- -3'
miRNA:   3'- -GAuGGACCCUa---UGUCCC---UCGGAGucc -5'
29042 5' -55.7 NC_006146.1 + 75258 0.66 0.920075
Target:  5'- -gGCgUGGGGUGCAcGGGgauGGCCg-AGGa -3'
miRNA:   3'- gaUGgACCCUAUGU-CCC---UCGGagUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.