miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 842 0.66 0.930764
Target:  5'- -cACCuUGGGGcAUAGGG-GCCcUAGGa -3'
miRNA:   3'- gaUGG-ACCCUaUGUCCCuCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 2933 0.68 0.875356
Target:  5'- uUACCgGGGA-GCuGGGAGUCaUCAGa -3'
miRNA:   3'- gAUGGaCCCUaUGuCCCUCGG-AGUCc -5'
29042 5' -55.7 NC_006146.1 + 3261 0.68 0.875356
Target:  5'- -gACCUGGGGacggcGCAGGccacGAGCCggGGGa -3'
miRNA:   3'- gaUGGACCCUa----UGUCC----CUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 5206 0.75 0.482964
Target:  5'- -gGCCUGGGGgagcUAGGGgugcagguccuugccGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUau--GUCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 8432 0.68 0.852899
Target:  5'- --cCCUGGGGacCAGGaGAGC-UCGGGg -3'
miRNA:   3'- gauGGACCCUauGUCC-CUCGgAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 12858 0.68 0.855999
Target:  5'- -cGCCUGGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCUa---UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 14016 0.67 0.895886
Target:  5'- gUGCUggaagGcGGAggGCAGGGAGCaggCGGGg -3'
miRNA:   3'- gAUGGa----C-CCUa-UGUCCCUCGga-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 15937 0.67 0.900386
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC--------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 18240 0.66 0.94051
Target:  5'- -gGCCUGGGGgagcuCAuGGAcaGCCUgGGGa -3'
miRNA:   3'- gaUGGACCCUau---GUcCCU--CGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 18860 0.74 0.517434
Target:  5'- gCUGCCgGGGugguggacGUGCGGGG-GCCUCAGc -3'
miRNA:   3'- -GAUGGaCCC--------UAUGUCCCuCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 19014 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 22092 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 23126 0.73 0.566817
Target:  5'- uCUuCCUGGGAgagGCcGGGAGCCUgGGc -3'
miRNA:   3'- -GAuGGACCCUa--UGuCCCUCGGAgUCc -5'
29042 5' -55.7 NC_006146.1 + 25170 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 28248 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 32006 0.7 0.747342
Target:  5'- -cACgCUaGGAggACAGaGGGGCCUCGGGa -3'
miRNA:   3'- gaUG-GAcCCUa-UGUC-CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 32418 0.69 0.793932
Target:  5'- -cACCUGGaAUAUAGGGgcGGCgUUAGGa -3'
miRNA:   3'- gaUGGACCcUAUGUCCC--UCGgAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 34515 0.73 0.617317
Target:  5'- -gAUUUGGGGUAgGcGGAGCUUCAGGa -3'
miRNA:   3'- gaUGGACCCUAUgUcCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 36234 0.72 0.647805
Target:  5'- -gGCCgGGGAggagGCAGGGcGGCUUCuGGa -3'
miRNA:   3'- gaUGGaCCCUa---UGUCCC-UCGGAGuCC- -5'
29042 5' -55.7 NC_006146.1 + 37115 0.66 0.914377
Target:  5'- uCUGCaugGGGAUGguGGGuagcuGCCUCGa- -3'
miRNA:   3'- -GAUGga-CCCUAUguCCCu----CGGAGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.