miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 170391 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 170089 0.67 0.908445
Target:  5'- -gGCCggcGGGAgggGCcggcgccgcagGGGGGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCUa--UG-----------UCCCUCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 169548 0.66 0.930764
Target:  5'- -gACCcgagGGGcgaGCGGGGGGCUUCcccGGGg -3'
miRNA:   3'- gaUGGa---CCCua-UGUCCCUCGGAG---UCC- -5'
29042 5' -55.7 NC_006146.1 + 169460 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 169157 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 168616 0.66 0.930764
Target:  5'- -gACCcgagGGGcgaGCGGGGGGCUUCcccGGGg -3'
miRNA:   3'- gaUGGa---CCCua-UGUCCCUCGGAG---UCC- -5'
29042 5' -55.7 NC_006146.1 + 168528 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 168225 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 167683 0.66 0.930764
Target:  5'- -gACCcgagGGGcgaGCGGGGGGCUUCcccGGGg -3'
miRNA:   3'- gaUGGa---CCCua-UGUCCCUCGGAG---UCC- -5'
29042 5' -55.7 NC_006146.1 + 167596 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 167293 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 166190 0.74 0.537006
Target:  5'- gUGCgUGGGGauUGCAGGuGGUCUCGGGg -3'
miRNA:   3'- gAUGgACCCU--AUGUCCcUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 157758 0.69 0.793032
Target:  5'- -gGCCUGGGAggucCGGGGuguugAGCCUgcugcccCAGGa -3'
miRNA:   3'- gaUGGACCCUau--GUCCC-----UCGGA-------GUCC- -5'
29042 5' -55.7 NC_006146.1 + 157482 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 157116 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 156943 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 156815 0.68 0.852899
Target:  5'- -gGCCUGGGGUGgcCGGGGAGgggUGGGg -3'
miRNA:   3'- gaUGGACCCUAU--GUCCCUCggaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 156709 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 154681 0.7 0.746381
Target:  5'- -gGCCUGGGAgucCGGGGuguugAGCCUgcugcccCAGGa -3'
miRNA:   3'- gaUGGACCCUau-GUCCC-----UCGGA-------GUCC- -5'
29042 5' -55.7 NC_006146.1 + 154404 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.