miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 82069 1.1 0.003145
Target:  5'- cCUACCUGGGAUACAGGGAGCCUCAGGc -3'
miRNA:   3'- -GAUGGACCCUAUGUCCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 131490 0.69 0.817665
Target:  5'- --gUCUGGGGUGcCAGGGAucgaccgggaaaggGCC-CAGGg -3'
miRNA:   3'- gauGGACCCUAU-GUCCCU--------------CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 168528 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 51829 0.66 0.935755
Target:  5'- --cCCgGGGcgGCguggAGGGGGgCUCGGGg -3'
miRNA:   3'- gauGGaCCCuaUG----UCCCUCgGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 81854 0.77 0.365876
Target:  5'- aUACCcGGGcUACuGGGAGCCUCGGc -3'
miRNA:   3'- gAUGGaCCCuAUGuCCCUCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 89705 0.75 0.479201
Target:  5'- -gGCCUGGGAUACAcGGGuccgGGCCUugaauccagacCAGGu -3'
miRNA:   3'- gaUGGACCCUAUGU-CCC----UCGGA-----------GUCC- -5'
29042 5' -55.7 NC_006146.1 + 138346 0.74 0.527186
Target:  5'- -gAUUUGGGGU--AGcGGAGCCUCAGGa -3'
miRNA:   3'- gaUGGACCCUAugUC-CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 166190 0.74 0.537006
Target:  5'- gUGCgUGGGGauUGCAGGuGGUCUCGGGg -3'
miRNA:   3'- gAUGgACCCU--AUGUCCcUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 34515 0.73 0.617317
Target:  5'- -gAUUUGGGGUAgGcGGAGCUUCAGGa -3'
miRNA:   3'- gaUGGACCCUAUgUcCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 104975 0.69 0.811622
Target:  5'- -gGCCUGGGGcucccgAGGGGGCuCUgGGGa -3'
miRNA:   3'- gaUGGACCCUaug---UCCCUCG-GAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 109999 0.72 0.637644
Target:  5'- -gGCC-GGGAUGu--GGGGCCUCAGGg -3'
miRNA:   3'- gaUGGaCCCUAUgucCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 47395 0.73 0.617317
Target:  5'- -cGCCUGGGGUcgaccguggcCAGGGccAGCCUCAGc -3'
miRNA:   3'- gaUGGACCCUAu---------GUCCC--UCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 82289 0.84 0.163075
Target:  5'- aUACUUGGGAUACAGGGAGUCgCAGc -3'
miRNA:   3'- gAUGGACCCUAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 38023 0.71 0.708222
Target:  5'- -aACCUGGGAUuuguugauGCAgaccucacaguGGGAGCCcagagUCAGGc -3'
miRNA:   3'- gaUGGACCCUA--------UGU-----------CCCUCGG-----AGUCC- -5'
29042 5' -55.7 NC_006146.1 + 137833 0.78 0.350154
Target:  5'- -cACCUGGaagGCAGGGGGgCUCGGGg -3'
miRNA:   3'- gaUGGACCcuaUGUCCCUCgGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 149937 0.74 0.537006
Target:  5'- cCUGCCcucGGGGUugAGGGGcGCC-CAGGc -3'
miRNA:   3'- -GAUGGa--CCCUAugUCCCU-CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 53460 0.7 0.76634
Target:  5'- uCUGCCcGGGAgGCGcGGGuGCCUCGucGGu -3'
miRNA:   3'- -GAUGGaCCCUaUGU-CCCuCGGAGU--CC- -5'
29042 5' -55.7 NC_006146.1 + 167596 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 82181 0.77 0.365876
Target:  5'- aUACCUGGauUACAGGGAGCCgCAGc -3'
miRNA:   3'- gAUGGACCcuAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 5206 0.75 0.482964
Target:  5'- -gGCCUGGGGgagcUAGGGgugcagguccuugccGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUau--GUCCC---------------UCGGAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.