miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 105192 0.67 0.88242
Target:  5'- -gACCgGGGc--CGGGGAGCCggGGGu -3'
miRNA:   3'- gaUGGaCCCuauGUCCCUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 150960 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 147882 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 144804 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 141726 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 14016 0.67 0.895886
Target:  5'- gUGCUggaagGcGGAggGCAGGGAGCaggCGGGg -3'
miRNA:   3'- gAUGGa----C-CCUa-UGUCCCUCGga-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 71246 0.67 0.889265
Target:  5'- aCU-CCUGGGGccugGCGGGGggcGGCCUCu-- -3'
miRNA:   3'- -GAuGGACCCUa---UGUCCC---UCGGAGucc -5'
29042 5' -55.7 NC_006146.1 + 92315 0.67 0.889265
Target:  5'- gCUGCugCUGGGggGCGGGcccGGCCUgGGGc -3'
miRNA:   3'- -GAUG--GACCCuaUGUCCc--UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 41494 0.67 0.885184
Target:  5'- -gGCCuUGGGGUgcGCGGGGAcgacgcccggcugacGCC-CGGGa -3'
miRNA:   3'- gaUGG-ACCCUA--UGUCCCU---------------CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 154038 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 157116 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 92225 0.67 0.908445
Target:  5'- gCUGCugCUGGGggGCGGGcccGGCCUguGGc -3'
miRNA:   3'- -GAUG--GACCCuaUGUCCc--UCGGAguCC- -5'
29042 5' -55.7 NC_006146.1 + 52996 0.66 0.920075
Target:  5'- cCUGCCggccGuGGccGCGGGGgucgaugaccAGCCUCGGGu -3'
miRNA:   3'- -GAUGGa---C-CCuaUGUCCC----------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 75258 0.66 0.920075
Target:  5'- -gGCgUGGGGUGCAcGGGgauGGCCg-AGGa -3'
miRNA:   3'- gaUGgACCCUAUGU-CCC---UCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 156709 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 153632 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 150554 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 147476 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 144398 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5'
29042 5' -55.7 NC_006146.1 + 141320 0.66 0.914377
Target:  5'- cCUGCCaGGGGgcaaAGGGGGCuCagAGGg -3'
miRNA:   3'- -GAUGGaCCCUaug-UCCCUCG-GagUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.