miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 82069 1.1 0.003145
Target:  5'- cCUACCUGGGAUACAGGGAGCCUCAGGc -3'
miRNA:   3'- -GAUGGACCCUAUGUCCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 82289 0.84 0.163075
Target:  5'- aUACUUGGGAUACAGGGAGUCgCAGc -3'
miRNA:   3'- gAUGGACCCUAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 137833 0.78 0.350154
Target:  5'- -cACCUGGaagGCAGGGGGgCUCGGGg -3'
miRNA:   3'- gaUGGACCcuaUGUCCCUCgGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 82181 0.77 0.365876
Target:  5'- aUACCUGGauUACAGGGAGCCgCAGc -3'
miRNA:   3'- gAUGGACCcuAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 81854 0.77 0.365876
Target:  5'- aUACCcGGGcUACuGGGAGCCUCGGc -3'
miRNA:   3'- gAUGGaCCCuAUGuCCCUCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 89705 0.75 0.479201
Target:  5'- -gGCCUGGGAUACAcGGGuccgGGCCUugaauccagacCAGGu -3'
miRNA:   3'- gaUGGACCCUAUGU-CCC----UCGGA-----------GUCC- -5'
29042 5' -55.7 NC_006146.1 + 5206 0.75 0.482964
Target:  5'- -gGCCUGGGGgagcUAGGGgugcagguccuugccGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUau--GUCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 18860 0.74 0.517434
Target:  5'- gCUGCCgGGGugguggacGUGCGGGG-GCCUCAGc -3'
miRNA:   3'- -GAUGGaCCC--------UAUGUCCCuCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 138346 0.74 0.527186
Target:  5'- -gAUUUGGGGU--AGcGGAGCCUCAGGa -3'
miRNA:   3'- gaUGGACCCUAugUC-CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 149937 0.74 0.537006
Target:  5'- cCUGCCcucGGGGUugAGGGGcGCC-CAGGc -3'
miRNA:   3'- -GAUGGa--CCCUAugUCCCU-CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 166190 0.74 0.537006
Target:  5'- gUGCgUGGGGauUGCAGGuGGUCUCGGGg -3'
miRNA:   3'- gAUGgACCCU--AUGUCCcUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 41067 0.74 0.546888
Target:  5'- -gGCCUcGGGGUGgAGGGAGgC-CAGGg -3'
miRNA:   3'- gaUGGA-CCCUAUgUCCCUCgGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 23126 0.73 0.566817
Target:  5'- uCUuCCUGGGAgagGCcGGGAGCCUgGGc -3'
miRNA:   3'- -GAuGGACCCUa--UGuCCCUCGGAgUCc -5'
29042 5' -55.7 NC_006146.1 + 157482 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 154404 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 148248 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 145170 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 142092 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 151326 0.73 0.607167
Target:  5'- -gGCCUGGGAccCGGGGAGgcacCCUgAGGu -3'
miRNA:   3'- gaUGGACCCUauGUCCCUC----GGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 47395 0.73 0.617317
Target:  5'- -cGCCUGGGGUcgaccguggcCAGGGccAGCCUCAGc -3'
miRNA:   3'- gaUGGACCCUAu---------GUCCC--UCGGAGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.