miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 47395 0.73 0.617317
Target:  5'- -cGCCUGGGGUcgaccguggcCAGGGccAGCCUCAGc -3'
miRNA:   3'- gaUGGACCCUAu---------GUCCC--UCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 44946 0.72 0.627479
Target:  5'- -gGCCaGGGGcGCGGGGAGgCCcCGGGg -3'
miRNA:   3'- gaUGGaCCCUaUGUCCCUC-GGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 109999 0.72 0.637644
Target:  5'- -gGCC-GGGAUGu--GGGGCCUCAGGg -3'
miRNA:   3'- gaUGGaCCCUAUgucCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 36234 0.72 0.647805
Target:  5'- -gGCCgGGGAggagGCAGGGcGGCUUCuGGa -3'
miRNA:   3'- gaUGGaCCCUa---UGUCCC-UCGGAGuCC- -5'
29042 5' -55.7 NC_006146.1 + 70699 0.71 0.678182
Target:  5'- uCUGCgCUGGGA-AC-GGGAGC-UCAGGa -3'
miRNA:   3'- -GAUG-GACCCUaUGuCCCUCGgAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 88288 0.71 0.678182
Target:  5'- -gGCCUGGGAUAU--GGAGCCcaagUAGGc -3'
miRNA:   3'- gaUGGACCCUAUGucCCUCGGa---GUCC- -5'
29042 5' -55.7 NC_006146.1 + 38023 0.71 0.708222
Target:  5'- -aACCUGGGAUuuguugauGCAgaccucacaguGGGAGCCcagagUCAGGc -3'
miRNA:   3'- gaUGGACCCUA--------UGU-----------CCCUCGG-----AGUCC- -5'
29042 5' -55.7 NC_006146.1 + 124521 0.71 0.708222
Target:  5'- --cCCUGGcGAgggACGGGG-GCCUgGGGg -3'
miRNA:   3'- gauGGACC-CUa--UGUCCCuCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 150660 0.71 0.717133
Target:  5'- -gGCCUGGGGUGgcCGGGGAgggguggggagugGCCagGGGg -3'
miRNA:   3'- gaUGGACCCUAU--GUCCCU-------------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 153865 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 150787 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 147709 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 144632 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 141554 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 156943 0.7 0.744456
Target:  5'- -gACUUGGGA--CAGugagcucaggagccGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGACCCUauGUC--------------CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 154681 0.7 0.746381
Target:  5'- -gGCCUGGGAgucCGGGGuguugAGCCUgcugcccCAGGa -3'
miRNA:   3'- gaUGGACCCUau-GUCCC-----UCGGA-------GUCC- -5'
29042 5' -55.7 NC_006146.1 + 32006 0.7 0.747342
Target:  5'- -cACgCUaGGAggACAGaGGGGCCUCGGGa -3'
miRNA:   3'- gaUG-GAcCCUa-UGUC-CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 53460 0.7 0.76634
Target:  5'- uCUGCCcGGGAgGCGcGGGuGCCUCGucGGu -3'
miRNA:   3'- -GAUGGaCCCUaUGU-CCCuCGGAGU--CC- -5'
29042 5' -55.7 NC_006146.1 + 51576 0.7 0.76634
Target:  5'- -cGCCgccGGGAgggGCccgGGGGAGCCagAGGg -3'
miRNA:   3'- gaUGGa--CCCUa--UG---UCCCUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 142369 0.69 0.793032
Target:  5'- -gGCCUGGGAggucCGGGGuguugAGCCUgcugcccCAGGa -3'
miRNA:   3'- gaUGGACCCUau--GUCCC-----UCGGA-------GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.