miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 125608 0.67 0.908445
Target:  5'- --cUCUGGGucuugguCuGGcGGGCCUCAGGg -3'
miRNA:   3'- gauGGACCCuau----GuCC-CUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 19014 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 28248 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 22092 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 25170 0.67 0.904774
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 48584 0.67 0.90228
Target:  5'- -gGCCUcgGGGGU-CAGGGAGgCCagaAGGg -3'
miRNA:   3'- gaUGGA--CCCUAuGUCCCUC-GGag-UCC- -5'
29042 5' -55.7 NC_006146.1 + 58179 0.67 0.90228
Target:  5'- cCUGCCUG---UACAcGG-GCCUCAGGg -3'
miRNA:   3'- -GAUGGACccuAUGUcCCuCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 90178 0.67 0.90228
Target:  5'- -gGCCgcggcagGGGAgguagUGCAGGGGGCagaGGGg -3'
miRNA:   3'- gaUGGa------CCCU-----AUGUCCCUCGgagUCC- -5'
29042 5' -55.7 NC_006146.1 + 15937 0.67 0.900386
Target:  5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCua--UGuCCC--------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 14016 0.67 0.895886
Target:  5'- gUGCUggaagGcGGAggGCAGGGAGCaggCGGGg -3'
miRNA:   3'- gAUGGa----C-CCUa-UGUCCCUCGga-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 157116 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 168225 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 167293 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 145706 0.67 0.895886
Target:  5'- -cGCCUGGGA-GCAGGaGcGCgUCAGc -3'
miRNA:   3'- gaUGGACCCUaUGUCC-CuCGgAGUCc -5'
29042 5' -55.7 NC_006146.1 + 141726 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 154038 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 150960 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 81908 0.67 0.895886
Target:  5'- gUGCCaaacAUAUGGGGAGCCUCAGc -3'
miRNA:   3'- gAUGGacccUAUGUCCCUCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 144804 0.67 0.895886
Target:  5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3'
miRNA:   3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 169157 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.