miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 169157 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 71246 0.67 0.889265
Target:  5'- aCU-CCUGGGGccugGCGGGGggcGGCCUCu-- -3'
miRNA:   3'- -GAuGGACCCUa---UGUCCC---UCGGAGucc -5'
29042 5' -55.7 NC_006146.1 + 92315 0.67 0.889265
Target:  5'- gCUGCugCUGGGggGCGGGcccGGCCUgGGGc -3'
miRNA:   3'- -GAUG--GACCCuaUGUCCc--UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 41494 0.67 0.885184
Target:  5'- -gGCCuUGGGGUgcGCGGGGAcgacgcccggcugacGCC-CGGGa -3'
miRNA:   3'- gaUGG-ACCCUA--UGUCCCU---------------CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 48995 0.67 0.88242
Target:  5'- -gACCUGGGAgGCuGGGgcguugcccAGCUUgGGGa -3'
miRNA:   3'- gaUGGACCCUaUGuCCC---------UCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 105192 0.67 0.88242
Target:  5'- -gACCgGGGc--CGGGGAGCCggGGGu -3'
miRNA:   3'- gaUGGaCCCuauGUCCCUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 97733 0.67 0.88242
Target:  5'- aUGCCgGGaGGUGCuGGGGcGCCUCAc- -3'
miRNA:   3'- gAUGGaCC-CUAUGuCCCU-CGGAGUcc -5'
29042 5' -55.7 NC_006146.1 + 86478 0.67 0.881723
Target:  5'- -aGCCUGGGcuUugAGGGgcagcugGGCCUUgAGGg -3'
miRNA:   3'- gaUGGACCCu-AugUCCC-------UCGGAG-UCC- -5'
29042 5' -55.7 NC_006146.1 + 2933 0.68 0.875356
Target:  5'- uUACCgGGGA-GCuGGGAGUCaUCAGa -3'
miRNA:   3'- gAUGGaCCCUaUGuCCCUCGG-AGUCc -5'
29042 5' -55.7 NC_006146.1 + 47512 0.68 0.875356
Target:  5'- -gGCCgGGGAcUACAGcGGcAGUgUCGGGg -3'
miRNA:   3'- gaUGGaCCCU-AUGUC-CC-UCGgAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 3261 0.68 0.875356
Target:  5'- -gACCUGGGGacggcGCAGGccacGAGCCggGGGa -3'
miRNA:   3'- gaUGGACCCUa----UGUCC----CUCGGagUCC- -5'
29042 5' -55.7 NC_006146.1 + 153548 0.68 0.874637
Target:  5'- gCUGCUUGGGA-ACGGuGGAGCUgccguggUCAGc -3'
miRNA:   3'- -GAUGGACCCUaUGUC-CCUCGG-------AGUCc -5'
29042 5' -55.7 NC_006146.1 + 76855 0.68 0.868077
Target:  5'- -aACgaGGGAUACGcGGcGGCgCUCGGGg -3'
miRNA:   3'- gaUGgaCCCUAUGU-CCcUCG-GAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 40008 0.68 0.868077
Target:  5'- -gGCCggugUGGGcguaGCAGGGGGCCUgcUGGGg -3'
miRNA:   3'- gaUGG----ACCCua--UGUCCCUCGGA--GUCC- -5'
29042 5' -55.7 NC_006146.1 + 144268 0.68 0.868077
Target:  5'- ---aUUGaGAUGCGGGGAGaCCUCAGa -3'
miRNA:   3'- gaugGACcCUAUGUCCCUC-GGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 137028 0.68 0.86059
Target:  5'- -cACCccgGGGAggaggccgGguGGGGGCCUgGGGu -3'
miRNA:   3'- gaUGGa--CCCUa-------UguCCCUCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 137215 0.68 0.86059
Target:  5'- -cACCccgGGGAggaagccgGguGGGGGCCUgGGGu -3'
miRNA:   3'- gaUGGa--CCCUa-------UguCCCUCGGAgUCC- -5'
29042 5' -55.7 NC_006146.1 + 12858 0.68 0.855999
Target:  5'- -cGCCUGGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCUa---UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 147582 0.68 0.852899
Target:  5'- -gGCCUGGGGUGgcCGGGGAGgggUGGGg -3'
miRNA:   3'- gaUGGACCCUAU--GUCCCUCggaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 82389 0.68 0.852899
Target:  5'- -cACCcGGGuUACAGGGAgauacaGCCcCAGGc -3'
miRNA:   3'- gaUGGaCCCuAUGUCCCU------CGGaGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.