Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29042 | 5' | -55.7 | NC_006146.1 | + | 168225 | 0.67 | 0.895886 |
Target: 5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3' miRNA: 3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 169157 | 0.67 | 0.895886 |
Target: 5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3' miRNA: 3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 81908 | 0.67 | 0.895886 |
Target: 5'- gUGCCaaacAUAUGGGGAGCCUCAGc -3' miRNA: 3'- gAUGGacccUAUGUCCCUCGGAGUCc -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 48584 | 0.67 | 0.90228 |
Target: 5'- -gGCCUcgGGGGU-CAGGGAGgCCagaAGGg -3' miRNA: 3'- gaUGGA--CCCUAuGUCCCUC-GGag-UCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 58179 | 0.67 | 0.90228 |
Target: 5'- cCUGCCUG---UACAcGG-GCCUCAGGg -3' miRNA: 3'- -GAUGGACccuAUGUcCCuCGGAGUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 19014 | 0.67 | 0.904774 |
Target: 5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3' miRNA: 3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 125608 | 0.67 | 0.908445 |
Target: 5'- --cUCUGGGucuugguCuGGcGGGCCUCAGGg -3' miRNA: 3'- gauGGACCCuau----GuCC-CUCGGAGUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 28248 | 0.67 | 0.904774 |
Target: 5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3' miRNA: 3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 154038 | 0.67 | 0.895886 |
Target: 5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3' miRNA: 3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 150960 | 0.67 | 0.895886 |
Target: 5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3' miRNA: 3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 147882 | 0.67 | 0.895886 |
Target: 5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3' miRNA: 3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 144804 | 0.67 | 0.895886 |
Target: 5'- -gGCCgGGGAgggagGCGGGGAggacagGCCagGGGa -3' miRNA: 3'- gaUGGaCCCUa----UGUCCCU------CGGagUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 71246 | 0.67 | 0.889265 |
Target: 5'- aCU-CCUGGGGccugGCGGGGggcGGCCUCu-- -3' miRNA: 3'- -GAuGGACCCUa---UGUCCC---UCGGAGucc -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 92315 | 0.67 | 0.889265 |
Target: 5'- gCUGCugCUGGGggGCGGGcccGGCCUgGGGc -3' miRNA: 3'- -GAUG--GACCCuaUGUCCc--UCGGAgUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 41494 | 0.67 | 0.885184 |
Target: 5'- -gGCCuUGGGGUgcGCGGGGAcgacgcccggcugacGCC-CGGGa -3' miRNA: 3'- gaUGG-ACCCUA--UGUCCCU---------------CGGaGUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 105192 | 0.67 | 0.88242 |
Target: 5'- -gACCgGGGc--CGGGGAGCCggGGGu -3' miRNA: 3'- gaUGGaCCCuauGUCCCUCGGagUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 48995 | 0.67 | 0.88242 |
Target: 5'- -gACCUGGGAgGCuGGGgcguugcccAGCUUgGGGa -3' miRNA: 3'- gaUGGACCCUaUGuCCC---------UCGGAgUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 86478 | 0.67 | 0.881723 |
Target: 5'- -aGCCUGGGcuUugAGGGgcagcugGGCCUUgAGGg -3' miRNA: 3'- gaUGGACCCu-AugUCCC-------UCGGAG-UCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 22092 | 0.67 | 0.904774 |
Target: 5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3' miRNA: 3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5' |
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29042 | 5' | -55.7 | NC_006146.1 | + | 25170 | 0.67 | 0.904774 |
Target: 5'- -cGCCUGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3' miRNA: 3'- gaUGGACCCua--UGuCCC---------------UCGGAGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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