miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29042 5' -55.7 NC_006146.1 + 65204 0.68 0.836931
Target:  5'- -cGCuCUGGGGgccCuGGGAGCC-CGGGc -3'
miRNA:   3'- gaUG-GACCCUau-GuCCCUCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 168528 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 47395 0.73 0.617317
Target:  5'- -cGCCUGGGGUcgaccguggcCAGGGccAGCCUCAGc -3'
miRNA:   3'- gaUGGACCCUAu---------GUCCC--UCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 82181 0.77 0.365876
Target:  5'- aUACCUGGauUACAGGGAGCCgCAGc -3'
miRNA:   3'- gAUGGACCcuAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 168225 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 144268 0.68 0.868077
Target:  5'- ---aUUGaGAUGCGGGGAGaCCUCAGa -3'
miRNA:   3'- gaugGACcCUAUGUCCCUC-GGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 131490 0.69 0.817665
Target:  5'- --gUCUGGGGUGcCAGGGAucgaccgggaaaggGCC-CAGGg -3'
miRNA:   3'- gauGGACCCUAU-GUCCCU--------------CGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 137833 0.78 0.350154
Target:  5'- -cACCUGGaagGCAGGGGGgCUCGGGg -3'
miRNA:   3'- gaUGGACCcuaUGUCCCUCgGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 12858 0.68 0.855999
Target:  5'- -cGCCUGGGGcgagGCuGGGuggcugggcaggccgGGUCUCGGGu -3'
miRNA:   3'- gaUGGACCCUa---UGuCCC---------------UCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 82289 0.84 0.163075
Target:  5'- aUACUUGGGAUACAGGGAGUCgCAGc -3'
miRNA:   3'- gAUGGACCCUAUGUCCCUCGGaGUCc -5'
29042 5' -55.7 NC_006146.1 + 167596 0.69 0.818521
Target:  5'- -gGCC-GGGccuccccuGGGGGCCUCGGGg -3'
miRNA:   3'- gaUGGaCCCuaugu---CCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 153344 0.68 0.84501
Target:  5'- -gAUCUGGcGGcGCAGGGAGUCaUAGGc -3'
miRNA:   3'- gaUGGACC-CUaUGUCCCUCGGaGUCC- -5'
29042 5' -55.7 NC_006146.1 + 38023 0.71 0.708222
Target:  5'- -aACCUGGGAUuuguugauGCAgaccucacaguGGGAGCCcagagUCAGGc -3'
miRNA:   3'- gaUGGACCCUA--------UGU-----------CCCUCGG-----AGUCC- -5'
29042 5' -55.7 NC_006146.1 + 34515 0.73 0.617317
Target:  5'- -gAUUUGGGGUAgGcGGAGCUUCAGGa -3'
miRNA:   3'- gaUGGACCCUAUgUcCCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 138346 0.74 0.527186
Target:  5'- -gAUUUGGGGU--AGcGGAGCCUCAGGa -3'
miRNA:   3'- gaUGGACCCUAugUC-CCUCGGAGUCC- -5'
29042 5' -55.7 NC_006146.1 + 81854 0.77 0.365876
Target:  5'- aUACCcGGGcUACuGGGAGCCUCGGc -3'
miRNA:   3'- gAUGGaCCCuAUGuCCCUCGGAGUCc -5'
29042 5' -55.7 NC_006146.1 + 48584 0.67 0.90228
Target:  5'- -gGCCUcgGGGGU-CAGGGAGgCCagaAGGg -3'
miRNA:   3'- gaUGGA--CCCUAuGUCCCUC-GGag-UCC- -5'
29042 5' -55.7 NC_006146.1 + 169157 0.67 0.895886
Target:  5'- -gGCCggcGGGAggggccggcgccUGCAGGGggGGCCggCGGGg -3'
miRNA:   3'- gaUGGa--CCCU------------AUGUCCC--UCGGa-GUCC- -5'
29042 5' -55.7 NC_006146.1 + 97733 0.67 0.88242
Target:  5'- aUGCCgGGaGGUGCuGGGGcGCCUCAc- -3'
miRNA:   3'- gAUGGaCC-CUAUGuCCCU-CGGAGUcc -5'
29042 5' -55.7 NC_006146.1 + 153548 0.68 0.874637
Target:  5'- gCUGCUUGGGA-ACGGuGGAGCUgccguggUCAGc -3'
miRNA:   3'- -GAUGGACCCUaUGUC-CCUCGG-------AGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.