Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 50354 | 0.68 | 0.490307 |
Target: 5'- -cGGCCaGCCUGGggaUCUugGCC-AGCAg -3' miRNA: 3'- uaCCGG-CGGGCC---AGGugCGGaUCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 51934 | 0.68 | 0.481156 |
Target: 5'- -gGGCgGCCCcggugcGGUCUGCGCgccaaCUGGCGCc -3' miRNA: 3'- uaCCGgCGGG------CCAGGUGCG-----GAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 54782 | 0.71 | 0.326075 |
Target: 5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3' miRNA: 3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 55475 | 0.67 | 0.512589 |
Target: 5'- gAUGGCCgcgggcgagaacgagGCCCGGccgCCAgcUGCCUccuGCACg -3' miRNA: 3'- -UACCGG---------------CGGGCCa--GGU--GCGGAu--CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 57150 | 0.66 | 0.585516 |
Target: 5'- gGUGGCCGaCCGccgcuUCCACGCCUuccuCACc -3' miRNA: 3'- -UACCGGCgGGCc----AGGUGCGGAuc--GUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 57394 | 0.66 | 0.56605 |
Target: 5'- cUGGCCccgcgaccguGCCCGGccgaCgCACGCCUcuacguGGCGCu -3' miRNA: 3'- uACCGG----------CGGGCCa---G-GUGCGGA------UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 60007 | 0.66 | 0.56605 |
Target: 5'- -aGGCCaacgcgGCCCcGUCCcCGCCU-GCGCc -3' miRNA: 3'- uaCCGG------CGGGcCAGGuGCGGAuCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 61518 | 0.66 | 0.614934 |
Target: 5'- --uGCCGCCCuGUcauucagaaaCCugGCCUacgGGCGCa -3' miRNA: 3'- uacCGGCGGGcCA----------GGugCGGA---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 67207 | 0.73 | 0.232154 |
Target: 5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3' miRNA: 3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 67314 | 0.66 | 0.555414 |
Target: 5'- -gGGCCacguccgcgcugaGCCCGGcCCAgGCCcgGGCGa -3' miRNA: 3'- uaCCGG-------------CGGGCCaGGUgCGGa-UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 68111 | 0.66 | 0.605107 |
Target: 5'- -gGGCgGCcagCCGGUCCGCGgUgagcGGCGCc -3' miRNA: 3'- uaCCGgCG---GGCCAGGUGCgGa---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 70150 | 0.67 | 0.508846 |
Target: 5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3' miRNA: 3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 72455 | 0.68 | 0.477518 |
Target: 5'- cUGGCC-CCCGGgCgGCGCCgaaaccgguucugGGCGCu -3' miRNA: 3'- uACCGGcGGGCCaGgUGCGGa------------UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 81775 | 0.76 | 0.139809 |
Target: 5'- cAUGGCCGCCCGGUCUcCGggggugccaCCUGGgGCa -3' miRNA: 3'- -UACCGGCGGGCCAGGuGC---------GGAUCgUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 82093 | 0.69 | 0.428119 |
Target: 5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3' miRNA: 3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 86529 | 1.06 | 0.001066 |
Target: 5'- gAUGGCCGCCCGGUCCACGCCUAGCACc -3' miRNA: 3'- -UACCGGCGGGCCAGGUGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 87587 | 0.67 | 0.524832 |
Target: 5'- aAUGGCC-UCaGGUCCGagcgaggaacccugUGCCUGGCGCg -3' miRNA: 3'- -UACCGGcGGgCCAGGU--------------GCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 90118 | 0.66 | 0.605107 |
Target: 5'- -gGGCCuCCUcugGGguaucUCCAUGCCUGGUGCg -3' miRNA: 3'- uaCCGGcGGG---CC-----AGGUGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 92994 | 0.71 | 0.312073 |
Target: 5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3' miRNA: 3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 94648 | 0.67 | 0.508846 |
Target: 5'- gAUGGCCGCCCuGGggaCCACGa--AGCGg -3' miRNA: 3'- -UACCGGCGGG-CCa--GGUGCggaUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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