miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 33359 0.67 0.499538
Target:  5'- gGUGGCCGCCggugGGUCCGCcggGCCgcuGCc- -3'
miRNA:   3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5'
29047 3' -63 NC_006146.1 + 33433 0.67 0.518226
Target:  5'- --cGCCGCUCGGUCCugGggcuCCggguGCACc -3'
miRNA:   3'- uacCGGCGGGCCAGGugC----GGau--CGUG- -5'
29047 3' -63 NC_006146.1 + 33537 0.66 0.56605
Target:  5'- -aGGUugUGCCCGGcuugCCugGCCcUGGUGCu -3'
miRNA:   3'- uaCCG--GCGGGCCa---GGugCGG-AUCGUG- -5'
29047 3' -63 NC_006146.1 + 33974 0.67 0.499538
Target:  5'- cGUGGuCCGCUgGGUCCGCugguCCgguGCACc -3'
miRNA:   3'- -UACC-GGCGGgCCAGGUGc---GGau-CGUG- -5'
29047 3' -63 NC_006146.1 + 34081 0.68 0.481156
Target:  5'- -gGGCCGgggguCCCGGggggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa------GGUGC-GGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 39403 0.7 0.378696
Target:  5'- -gGGCCcuuuCCCGGUCgAUcCCUGGCACc -3'
miRNA:   3'- uaCCGGc---GGGCCAGgUGcGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 40374 0.7 0.370839
Target:  5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3'
miRNA:   3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 40651 0.68 0.481156
Target:  5'- cAUGGUgGCCCGGuUCCugGagaCUGGUg- -3'
miRNA:   3'- -UACCGgCGGGCC-AGGugCg--GAUCGug -5'
29047 3' -63 NC_006146.1 + 40976 0.66 0.585516
Target:  5'- -aGaCCGCCgUGGUgCCGCGCC-GGCGCc -3'
miRNA:   3'- uaCcGGCGG-GCCA-GGUGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 41590 0.66 0.614934
Target:  5'- cUGGCCgaggcggagagGCCCGGggggcuggUCCGCuggGCCcgGGCGCa -3'
miRNA:   3'- uACCGG-----------CGGGCC--------AGGUG---CGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 42067 0.66 0.601181
Target:  5'- cUGGCCGggcuuaccugcuCCUGGaCCGCGCCguccuucgcggacGGCGCa -3'
miRNA:   3'- uACCGGC------------GGGCCaGGUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 42790 0.67 0.546755
Target:  5'- cGUGGCCGCCuCGG-CCAgG-UUGGCGg -3'
miRNA:   3'- -UACCGGCGG-GCCaGGUgCgGAUCGUg -5'
29047 3' -63 NC_006146.1 + 43277 0.69 0.436721
Target:  5'- -gGGCgGCCUggaGGUCCGgcaggUGCCUAGCGu -3'
miRNA:   3'- uaCCGgCGGG---CCAGGU-----GCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 43336 0.67 0.546755
Target:  5'- -cGGCCGCCCaGGgCCA-GCa-GGCGCa -3'
miRNA:   3'- uaCCGGCGGG-CCaGGUgCGgaUCGUG- -5'
29047 3' -63 NC_006146.1 + 43646 0.66 0.585516
Target:  5'- cGUGGCCGCCUGGggagaggggCC-CGgCUcGCAUu -3'
miRNA:   3'- -UACCGGCGGGCCa--------GGuGCgGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 44586 0.67 0.518226
Target:  5'- cUGGCC-CCCGGgCCGCuGCCUuucccguuGCAUg -3'
miRNA:   3'- uACCGGcGGGCCaGGUG-CGGAu-------CGUG- -5'
29047 3' -63 NC_006146.1 + 45552 0.7 0.370839
Target:  5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3'
miRNA:   3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5'
29047 3' -63 NC_006146.1 + 47218 0.68 0.463108
Target:  5'- cUGGCCGCCUccgCCACGaucuugagCUGGCGCg -3'
miRNA:   3'- uACCGGCGGGccaGGUGCg-------GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 47783 0.68 0.481156
Target:  5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3'
miRNA:   3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 48227 0.66 0.56605
Target:  5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3'
miRNA:   3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.