Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29047 | 3' | -63 | NC_006146.1 | + | 50354 | 0.68 | 0.490307 |
Target: 5'- -cGGCCaGCCUGGggaUCUugGCC-AGCAg -3' miRNA: 3'- uaCCGG-CGGGCC---AGGugCGGaUCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 119260 | 0.68 | 0.481156 |
Target: 5'- cUGGCCcCCUGGgagUCCAgaGCCUggAGCACa -3' miRNA: 3'- uACCGGcGGGCC---AGGUg-CGGA--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 28575 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33187 | 0.71 | 0.319016 |
Target: 5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3' miRNA: 3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 43336 | 0.67 | 0.546755 |
Target: 5'- -cGGCCGCCCaGGgCCA-GCa-GGCGCa -3' miRNA: 3'- uaCCGGCGGG-CCaGGUgCGgaUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 94648 | 0.67 | 0.508846 |
Target: 5'- gAUGGCCGCCCuGGggaCCACGa--AGCGg -3' miRNA: 3'- -UACCGGCGGG-CCa--GGUGCggaUCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 47783 | 0.68 | 0.481156 |
Target: 5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3' miRNA: 3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 92994 | 0.71 | 0.312073 |
Target: 5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3' miRNA: 3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 70150 | 0.67 | 0.508846 |
Target: 5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3' miRNA: 3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 67207 | 0.73 | 0.232154 |
Target: 5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3' miRNA: 3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 51934 | 0.68 | 0.481156 |
Target: 5'- -gGGCgGCCCcggugcGGUCUGCGCgccaaCUGGCGCc -3' miRNA: 3'- uaCCGgCGGG------CCAGGUGCG-----GAUCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33237 | 0.67 | 0.499538 |
Target: 5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3' miRNA: 3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 98647 | 0.69 | 0.436721 |
Target: 5'- gAUGGCCaucagcagacaGCCUGGUCCccgUGCCUucacGCGCa -3' miRNA: 3'- -UACCGG-----------CGGGCCAGGu--GCGGAu---CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 45552 | 0.7 | 0.370839 |
Target: 5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3' miRNA: 3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 19341 | 0.7 | 0.370839 |
Target: 5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3' miRNA: 3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 54782 | 0.71 | 0.326075 |
Target: 5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3' miRNA: 3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 48227 | 0.66 | 0.56605 |
Target: 5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3' miRNA: 3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 67314 | 0.66 | 0.555414 |
Target: 5'- -gGGCCacguccgcgcugaGCCCGGcCCAgGCCcgGGCGa -3' miRNA: 3'- uaCCGG-------------CGGGCCaGGUgCGGa-UCGUg -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 33433 | 0.67 | 0.518226 |
Target: 5'- --cGCCGCUCGGUCCugGggcuCCggguGCACc -3' miRNA: 3'- uacCGGCGGGCCAGGugC----GGau--CGUG- -5' |
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29047 | 3' | -63 | NC_006146.1 | + | 105377 | 0.67 | 0.508846 |
Target: 5'- -gGGCCaCCaGGUCU-CGCUUAGCACu -3' miRNA: 3'- uaCCGGcGGgCCAGGuGCGGAUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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