miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 86529 1.06 0.001066
Target:  5'- gAUGGCCGCCCGGUCCACGCCUAGCACc -3'
miRNA:   3'- -UACCGGCGGGCCAGGUGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 47783 0.68 0.481156
Target:  5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3'
miRNA:   3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 119260 0.68 0.481156
Target:  5'- cUGGCCcCCUGGgagUCCAgaGCCUggAGCACa -3'
miRNA:   3'- uACCGGcGGGCC---AGGUg-CGGA--UCGUG- -5'
29047 3' -63 NC_006146.1 + 137913 0.66 0.614934
Target:  5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 54782 0.71 0.326075
Target:  5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3'
miRNA:   3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 13185 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 19341 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 22419 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 45552 0.7 0.370839
Target:  5'- uUGGCCGCCCuGGccUCCGCGaggagCUcGCGCa -3'
miRNA:   3'- uACCGGCGGG-CC--AGGUGCg----GAuCGUG- -5'
29047 3' -63 NC_006146.1 + 158828 0.68 0.472088
Target:  5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3'
miRNA:   3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5'
29047 3' -63 NC_006146.1 + 98320 0.69 0.436721
Target:  5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3'
miRNA:   3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 28575 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 67207 0.73 0.232154
Target:  5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3'
miRNA:   3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5'
29047 3' -63 NC_006146.1 + 98647 0.69 0.436721
Target:  5'- gAUGGCCaucagcagacaGCCUGGUCCccgUGCCUucacGCGCa -3'
miRNA:   3'- -UACCGG-----------CGGGCCAGGu--GCGGAu---CGUG- -5'
29047 3' -63 NC_006146.1 + 92994 0.71 0.312073
Target:  5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3'
miRNA:   3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5'
29047 3' -63 NC_006146.1 + 25497 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 47218 0.68 0.463108
Target:  5'- cUGGCCGCCUccgCCACGaucuugagCUGGCGCg -3'
miRNA:   3'- uACCGGCGGGccaGGUGCg-------GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 51934 0.68 0.481156
Target:  5'- -gGGCgGCCCcggugcGGUCUGCGCgccaaCUGGCGCc -3'
miRNA:   3'- uaCCGgCGGG------CCAGGUGCG-----GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 33187 0.71 0.319016
Target:  5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3'
miRNA:   3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5'
29047 3' -63 NC_006146.1 + 16263 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.