miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 1163 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 2095 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 3027 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 9462 0.71 0.319016
Target:  5'- gGUGGgCGCggGGUCCGCGCCcucUGGCAUc -3'
miRNA:   3'- -UACCgGCGggCCAGGUGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 13185 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 13427 0.66 0.56605
Target:  5'- -aGGcCCGCCCGGUCauCACGCU--GCcCg -3'
miRNA:   3'- uaCC-GGCGGGCCAG--GUGCGGauCGuG- -5'
29047 3' -63 NC_006146.1 + 15415 0.73 0.232154
Target:  5'- gGUGGCCucagaggggcugGCCCGGcugcagUCC-UGCCUGGCGCa -3'
miRNA:   3'- -UACCGG------------CGGGCC------AGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 16190 0.66 0.585516
Target:  5'- cUGGCCGCCCuGGUggGCuGCaucugGGCGCa -3'
miRNA:   3'- uACCGGCGGG-CCAggUG-CGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 16263 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 17593 0.68 0.445421
Target:  5'- cUGGgCGaCCUGGcCCGgGCCUGGUGCc -3'
miRNA:   3'- uACCgGC-GGGCCaGGUgCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 19341 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 20943 0.67 0.518226
Target:  5'- cUGGCC-CCCacucCCACGCCUGGgCGCc -3'
miRNA:   3'- uACCGGcGGGcca-GGUGCGGAUC-GUG- -5'
29047 3' -63 NC_006146.1 + 21622 0.69 0.402928
Target:  5'- gAUGGCCGaggaCCCGGcCUACGCggagcGGCACg -3'
miRNA:   3'- -UACCGGC----GGGCCaGGUGCGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 22419 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 24057 0.69 0.394742
Target:  5'- -cGGCCccgagccagGCCCGGgcUCUACGC-UGGCGCg -3'
miRNA:   3'- uaCCGG---------CGGGCC--AGGUGCGgAUCGUG- -5'
29047 3' -63 NC_006146.1 + 25497 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 28575 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 32872 0.7 0.378696
Target:  5'- -gGGCggCGCgaGGUCCcUGCCUGGCACc -3'
miRNA:   3'- uaCCG--GCGggCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 33187 0.71 0.319016
Target:  5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3'
miRNA:   3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5'
29047 3' -63 NC_006146.1 + 33237 0.67 0.499538
Target:  5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3'
miRNA:   3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.