miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 86529 1.06 0.001066
Target:  5'- gAUGGCCGCCCGGUCCACGCCUAGCACc -3'
miRNA:   3'- -UACCGGCGGGCCAGGUGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 81775 0.76 0.139809
Target:  5'- cAUGGCCGCCCGGUCUcCGggggugccaCCUGGgGCa -3'
miRNA:   3'- -UACCGGCGGGCCAGGuGC---------GGAUCgUG- -5'
29047 3' -63 NC_006146.1 + 1163 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 2095 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 3027 0.75 0.18749
Target:  5'- -gGGCCGcCCCGGggcucccCCGCGCCgaucugAGCGCc -3'
miRNA:   3'- uaCCGGC-GGGCCa------GGUGCGGa-----UCGUG- -5'
29047 3' -63 NC_006146.1 + 15415 0.73 0.232154
Target:  5'- gGUGGCCucagaggggcugGCCCGGcugcagUCC-UGCCUGGCGCa -3'
miRNA:   3'- -UACCGG------------CGGGCC------AGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 67207 0.73 0.232154
Target:  5'- cUGGCCGUggCCGGUcgCCugGCCggccaGGCACa -3'
miRNA:   3'- uACCGGCG--GGCCA--GGugCGGa----UCGUG- -5'
29047 3' -63 NC_006146.1 + 92994 0.71 0.312073
Target:  5'- -aGGCCGCCCGcccCUGCGCCUguuaAGCAg -3'
miRNA:   3'- uaCCGGCGGGCca-GGUGCGGA----UCGUg -5'
29047 3' -63 NC_006146.1 + 33187 0.71 0.319016
Target:  5'- --cGCCGCUCGGUCCugGgCCUccgGGUGCu -3'
miRNA:   3'- uacCGGCGGGCCAGGugC-GGA---UCGUG- -5'
29047 3' -63 NC_006146.1 + 9462 0.71 0.319016
Target:  5'- gGUGGgCGCggGGUCCGCGCCcucUGGCAUc -3'
miRNA:   3'- -UACCgGCGggCCAGGUGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 54782 0.71 0.326075
Target:  5'- -gGGCCGCCagGGagCGCGCCUugGGCAg -3'
miRNA:   3'- uaCCGGCGGg-CCagGUGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 103571 0.7 0.340539
Target:  5'- -gGGCuCGCCCGGgccugggCCGgGCUcAGCGCg -3'
miRNA:   3'- uaCCG-GCGGGCCa------GGUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 106037 0.7 0.340539
Target:  5'- cGUGGCCGCCCa-UCCGgacauuggaGCCUGGCAg -3'
miRNA:   3'- -UACCGGCGGGccAGGUg--------CGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 16263 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 22419 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 19341 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 13185 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 103821 0.7 0.370839
Target:  5'- gGUGGCCGCCgaccccuucuCGG-CC-CGUCUGGCAg -3'
miRNA:   3'- -UACCGGCGG----------GCCaGGuGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 40374 0.7 0.370839
Target:  5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3'
miRNA:   3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 25497 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.