miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 13185 0.7 0.370839
Target:  5'- -cGGCCuGCCCGG-CCuCGCUccgGGCGCc -3'
miRNA:   3'- uaCCGG-CGGGCCaGGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 40374 0.7 0.370839
Target:  5'- -aGGCCcCCUGGUCgC-CGCCcGGCGCg -3'
miRNA:   3'- uaCCGGcGGGCCAG-GuGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 32872 0.7 0.378696
Target:  5'- -gGGCggCGCgaGGUCCcUGCCUGGCACc -3'
miRNA:   3'- uaCCG--GCGggCCAGGuGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 39403 0.7 0.378696
Target:  5'- -gGGCCcuuuCCCGGUCgAUcCCUGGCACc -3'
miRNA:   3'- uaCCGGc---GGGCCAGgUGcGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 24057 0.69 0.394742
Target:  5'- -cGGCCccgagccagGCCCGGgcUCUACGC-UGGCGCg -3'
miRNA:   3'- uaCCGG---------CGGGCC--AGGUGCGgAUCGUG- -5'
29047 3' -63 NC_006146.1 + 123905 0.69 0.394742
Target:  5'- -gGGCCGCugCCGGUCCgACGggcgcaauuCCUGGCGg -3'
miRNA:   3'- uaCCGGCG--GGCCAGG-UGC---------GGAUCGUg -5'
29047 3' -63 NC_006146.1 + 21622 0.69 0.402928
Target:  5'- gAUGGCCGaggaCCCGGcCUACGCggagcGGCACg -3'
miRNA:   3'- -UACCGGC----GGGCCaGGUGCGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 105691 0.69 0.410386
Target:  5'- cUGGaCGCCCGGgcUCCcagggcccccagaGCGCCUAGgGCu -3'
miRNA:   3'- uACCgGCGGGCC--AGG-------------UGCGGAUCgUG- -5'
29047 3' -63 NC_006146.1 + 82093 0.69 0.428119
Target:  5'- -aGGCCcagccacaacauGCCCagcaGGcUCCACGCCcugUAGCACa -3'
miRNA:   3'- uaCCGG------------CGGG----CC-AGGUGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 98320 0.69 0.436721
Target:  5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3'
miRNA:   3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 98647 0.69 0.436721
Target:  5'- gAUGGCCaucagcagacaGCCUGGUCCccgUGCCUucacGCGCa -3'
miRNA:   3'- -UACCGG-----------CGGGCCAGGu--GCGGAu---CGUG- -5'
29047 3' -63 NC_006146.1 + 43277 0.69 0.436721
Target:  5'- -gGGCgGCCUggaGGUCCGgcaggUGCCUAGCGu -3'
miRNA:   3'- uaCCGgCGGG---CCAGGU-----GCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 17593 0.68 0.445421
Target:  5'- cUGGgCGaCCUGGcCCGgGCCUGGUGCc -3'
miRNA:   3'- uACCgGC-GGGCCaGGUgCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 120925 0.68 0.454218
Target:  5'- uGUGGCgG-CCGGUCCAaaaccgcggGCCUuGCACg -3'
miRNA:   3'- -UACCGgCgGGCCAGGUg--------CGGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 126888 0.68 0.463108
Target:  5'- -cGGCCGCCCccUCCcCGCCgcGCAa -3'
miRNA:   3'- uaCCGGCGGGccAGGuGCGGauCGUg -5'
29047 3' -63 NC_006146.1 + 47218 0.68 0.463108
Target:  5'- cUGGCCGCCUccgCCACGaucuugagCUGGCGCg -3'
miRNA:   3'- uACCGGCGGGccaGGUGCg-------GAUCGUG- -5'
29047 3' -63 NC_006146.1 + 158828 0.68 0.472088
Target:  5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3'
miRNA:   3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5'
29047 3' -63 NC_006146.1 + 72455 0.68 0.477518
Target:  5'- cUGGCC-CCCGGgCgGCGCCgaaaccgguucugGGCGCu -3'
miRNA:   3'- uACCGGcGGGCCaGgUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 40651 0.68 0.481156
Target:  5'- cAUGGUgGCCCGGuUCCugGagaCUGGUg- -3'
miRNA:   3'- -UACCGgCGGGCC-AGGugCg--GAUCGug -5'
29047 3' -63 NC_006146.1 + 47783 0.68 0.481156
Target:  5'- -gGGCCGUCUGaaagCCcCGUCUAGCGCc -3'
miRNA:   3'- uaCCGGCGGGCca--GGuGCGGAUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.