miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 135512 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135790 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 167891 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 136162 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 137184 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 137370 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135883 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 161752 0.66 0.595299
Target:  5'- gGUGGCgGCUgaGGUCCgaggggGCGCCUgGGCGg -3'
miRNA:   3'- -UACCGgCGGg-CCAGG------UGCGGA-UCGUg -5'
29047 3' -63 NC_006146.1 + 155566 0.66 0.595299
Target:  5'- -gGGCuCGCgCGGggcgCC-CGCCaggGGCACa -3'
miRNA:   3'- uaCCG-GCGgGCCa---GGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 168823 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 169755 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 136441 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136627 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136255 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135976 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 136069 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135605 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135419 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135233 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135140 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.