miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 135790 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135233 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 167891 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 168823 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 161752 0.66 0.595299
Target:  5'- gGUGGCgGCUgaGGUCCgaggggGCGCCUgGGCGg -3'
miRNA:   3'- -UACCGgCGGg-CCAGG------UGCGGA-UCGUg -5'
29047 3' -63 NC_006146.1 + 43646 0.66 0.585516
Target:  5'- cGUGGCCGCCUGGggagaggggCC-CGgCUcGCAUu -3'
miRNA:   3'- -UACCGGCGGGCCa--------GGuGCgGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 123037 0.66 0.585516
Target:  5'- -aGGCgGCCCaGGUCCGgGCgCUGGa-- -3'
miRNA:   3'- uaCCGgCGGG-CCAGGUgCG-GAUCgug -5'
29047 3' -63 NC_006146.1 + 16190 0.66 0.585516
Target:  5'- cUGGCCGCCCuGGUggGCuGCaucugGGCGCa -3'
miRNA:   3'- uACCGGCGGG-CCAggUG-CGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 40976 0.66 0.585516
Target:  5'- -aGaCCGCCgUGGUgCCGCGCC-GGCGCc -3'
miRNA:   3'- uaCcGGCGG-GCCA-GGUGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 123611 0.66 0.585516
Target:  5'- uUGGCCaGCCagcggaGGUCCACGC--AGC-Cg -3'
miRNA:   3'- uACCGG-CGGg-----CCAGGUGCGgaUCGuG- -5'
29047 3' -63 NC_006146.1 + 124130 0.66 0.585516
Target:  5'- cGUGGCUGUgCGGUggCGCGUUUGGCAg -3'
miRNA:   3'- -UACCGGCGgGCCAg-GUGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 57150 0.66 0.585516
Target:  5'- gGUGGCCGaCCGccgcuUCCACGCCUuccuCACc -3'
miRNA:   3'- -UACCGGCgGGCc----AGGUGCGGAuc--GUG- -5'
29047 3' -63 NC_006146.1 + 156723 0.66 0.585516
Target:  5'- -aGGCU-CCgggGGUCCA-GCCUGGCGCa -3'
miRNA:   3'- uaCCGGcGGg--CCAGGUgCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 136720 0.66 0.584539
Target:  5'- gGUGGCCggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG-------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 112976 0.66 0.575764
Target:  5'- cAUGGCgGCgCCGG-CCAgCGCCcucuGCAUg -3'
miRNA:   3'- -UACCGgCG-GGCCaGGU-GCGGau--CGUG- -5'
29047 3' -63 NC_006146.1 + 156358 0.66 0.574791
Target:  5'- -cGGCCcagcagcuccaggGCCCGGUCCAgGCuCUccAGCc- -3'
miRNA:   3'- uaCCGG-------------CGGGCCAGGUgCG-GA--UCGug -5'
29047 3' -63 NC_006146.1 + 60007 0.66 0.56605
Target:  5'- -aGGCCaacgcgGCCCcGUCCcCGCCU-GCGCc -3'
miRNA:   3'- uaCCGG------CGGGcCAGGuGCGGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 13427 0.66 0.56605
Target:  5'- -aGGcCCGCCCGGUCauCACGCU--GCcCg -3'
miRNA:   3'- uaCC-GGCGGGCCAG--GUGCGGauCGuG- -5'
29047 3' -63 NC_006146.1 + 33537 0.66 0.56605
Target:  5'- -aGGUugUGCCCGGcuugCCugGCCcUGGUGCu -3'
miRNA:   3'- uaCCG--GCGGGCCa---GGugCGG-AUCGUG- -5'
29047 3' -63 NC_006146.1 + 48227 0.66 0.56605
Target:  5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3'
miRNA:   3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.