miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 158269 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 123037 0.66 0.585516
Target:  5'- -aGGCgGCCCaGGUCCGgGCgCUGGa-- -3'
miRNA:   3'- uaCCGgCGGG-CCAGGUgCG-GAUCgug -5'
29047 3' -63 NC_006146.1 + 40976 0.66 0.585516
Target:  5'- -aGaCCGCCgUGGUgCCGCGCC-GGCGCc -3'
miRNA:   3'- uaCcGGCGG-GCCA-GGUGCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 16190 0.66 0.585516
Target:  5'- cUGGCCGCCCuGGUggGCuGCaucugGGCGCa -3'
miRNA:   3'- uACCGGCGGG-CCAggUG-CGga---UCGUG- -5'
29047 3' -63 NC_006146.1 + 117156 0.66 0.56605
Target:  5'- --cGCCGCCC-GUCUuCGCCccGGCGCa -3'
miRNA:   3'- uacCGGCGGGcCAGGuGCGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 13427 0.66 0.56605
Target:  5'- -aGGcCCGCCCGGUCauCACGCU--GCcCg -3'
miRNA:   3'- uaCC-GGCGGGCCAG--GUGCGGauCGuG- -5'
29047 3' -63 NC_006146.1 + 116875 0.66 0.556378
Target:  5'- cAUGGCCGCCC--UCCggagGCGCCaccUGGUGCc -3'
miRNA:   3'- -UACCGGCGGGccAGG----UGCGG---AUCGUG- -5'
29047 3' -63 NC_006146.1 + 67314 0.66 0.555414
Target:  5'- -gGGCCacguccgcgcugaGCCCGGcCCAgGCCcgGGCGa -3'
miRNA:   3'- uaCCGG-------------CGGGCCaGGUgCGGa-UCGUg -5'
29047 3' -63 NC_006146.1 + 157339 0.66 0.556378
Target:  5'- -cGGCCugcuugcgcaGCCCGGcgCCcgGCGCCUgcAGCAg -3'
miRNA:   3'- uaCCGG----------CGGGCCa-GG--UGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 43646 0.66 0.585516
Target:  5'- cGUGGCCGCCUGGggagaggggCC-CGgCUcGCAUu -3'
miRNA:   3'- -UACCGGCGGGCCa--------GGuGCgGAuCGUG- -5'
29047 3' -63 NC_006146.1 + 161752 0.66 0.595299
Target:  5'- gGUGGCgGCUgaGGUCCgaggggGCGCCUgGGCGg -3'
miRNA:   3'- -UACCGgCGGg-CCAGG------UGCGGA-UCGUg -5'
29047 3' -63 NC_006146.1 + 42067 0.66 0.601181
Target:  5'- cUGGCCGggcuuaccugcuCCUGGaCCGCGCCguccuucgcggacGGCGCa -3'
miRNA:   3'- uACCGGC------------GGGCCaGGUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 155190 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 152112 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 149034 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 145956 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 142878 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 112901 0.66 0.605107
Target:  5'- -aGGCCGagaCCCGGgccUCCAgcuCGuCCUGGUGCg -3'
miRNA:   3'- uaCCGGC---GGGCC---AGGU---GC-GGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 90118 0.66 0.605107
Target:  5'- -gGGCCuCCUcugGGguaucUCCAUGCCUGGUGCg -3'
miRNA:   3'- uaCCGGcGGG---CC-----AGGUGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 105600 0.66 0.602162
Target:  5'- -aGGCCGCaagaggcagcgcagCCaGGUCCACaGCC--GCACg -3'
miRNA:   3'- uaCCGGCG--------------GG-CCAGGUG-CGGauCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.