miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 169755 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 168823 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 167891 0.66 0.595299
Target:  5'- -gGGCgGCCCGGggacCCuCGCgggGGCACc -3'
miRNA:   3'- uaCCGgCGGGCCa---GGuGCGga-UCGUG- -5'
29047 3' -63 NC_006146.1 + 165954 0.68 0.490307
Target:  5'- cGUGGCC-CCUGGUCCccgGgGCacagAGCACg -3'
miRNA:   3'- -UACCGGcGGGCCAGG---UgCGga--UCGUG- -5'
29047 3' -63 NC_006146.1 + 161752 0.66 0.595299
Target:  5'- gGUGGCgGCUgaGGUCCgaggggGCGCCUgGGCGg -3'
miRNA:   3'- -UACCGgCGGg-CCAGG------UGCGGA-UCGUg -5'
29047 3' -63 NC_006146.1 + 160617 0.66 0.605107
Target:  5'- -cGGCCGCCUGG--CAUGCC-AGCu- -3'
miRNA:   3'- uaCCGGCGGGCCagGUGCGGaUCGug -5'
29047 3' -63 NC_006146.1 + 158828 0.68 0.472088
Target:  5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3'
miRNA:   3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5'
29047 3' -63 NC_006146.1 + 158269 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 157742 0.67 0.527674
Target:  5'- -aGGuuGCCCGGcaCCACGUCUAugACg -3'
miRNA:   3'- uaCCggCGGGCCa-GGUGCGGAUcgUG- -5'
29047 3' -63 NC_006146.1 + 157339 0.66 0.556378
Target:  5'- -cGGCCugcuugcgcaGCCCGGcgCCcgGCGCCUgcAGCAg -3'
miRNA:   3'- uaCCGG----------CGGGCCa-GG--UGCGGA--UCGUg -5'
29047 3' -63 NC_006146.1 + 156723 0.66 0.585516
Target:  5'- -aGGCU-CCgggGGUCCA-GCCUGGCGCa -3'
miRNA:   3'- uaCCGGcGGg--CCAGGUgCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 156358 0.66 0.574791
Target:  5'- -cGGCCcagcagcuccaggGCCCGGUCCAgGCuCUccAGCc- -3'
miRNA:   3'- uaCCGG-------------CGGGCCAGGUgCG-GA--UCGug -5'
29047 3' -63 NC_006146.1 + 155566 0.66 0.595299
Target:  5'- -gGGCuCGCgCGGggcgCC-CGCCaggGGCACa -3'
miRNA:   3'- uaCCG-GCGgGCCa---GGuGCGGa--UCGUG- -5'
29047 3' -63 NC_006146.1 + 155190 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 152112 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 149034 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 145956 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 142878 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 137913 0.66 0.614934
Target:  5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 137556 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.