miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 123611 0.66 0.585516
Target:  5'- uUGGCCaGCCagcggaGGUCCACGC--AGC-Cg -3'
miRNA:   3'- uACCGG-CGGg-----CCAGGUGCGgaUCGuG- -5'
29047 3' -63 NC_006146.1 + 55475 0.67 0.512589
Target:  5'- gAUGGCCgcgggcgagaacgagGCCCGGccgCCAgcUGCCUccuGCACg -3'
miRNA:   3'- -UACCGG---------------CGGGCCa--GGU--GCGGAu--CGUG- -5'
29047 3' -63 NC_006146.1 + 98647 0.69 0.436721
Target:  5'- gAUGGCCaucagcagacaGCCUGGUCCccgUGCCUucacGCGCa -3'
miRNA:   3'- -UACCGG-----------CGGGCCAGGu--GCGGAu---CGUG- -5'
29047 3' -63 NC_006146.1 + 57150 0.66 0.585516
Target:  5'- gGUGGCCGaCCGccgcuUCCACGCCUuccuCACc -3'
miRNA:   3'- -UACCGGCgGGCc----AGGUGCGGAuc--GUG- -5'
29047 3' -63 NC_006146.1 + 98320 0.69 0.436721
Target:  5'- cGUGGCCGUCUGGcaCgGgGCCgGGCGCg -3'
miRNA:   3'- -UACCGGCGGGCCa-GgUgCGGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 136162 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 158828 0.68 0.472088
Target:  5'- -cGGCCgggGCCCGGcCCuCGCaaagcgAGCACa -3'
miRNA:   3'- uaCCGG---CGGGCCaGGuGCGga----UCGUG- -5'
29047 3' -63 NC_006146.1 + 136069 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135976 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135605 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135512 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135326 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 124130 0.66 0.585516
Target:  5'- cGUGGCUGUgCGGUggCGCGUUUGGCAg -3'
miRNA:   3'- -UACCGGCGgGCCAg-GUGCGGAUCGUg -5'
29047 3' -63 NC_006146.1 + 156358 0.66 0.574791
Target:  5'- -cGGCCcagcagcuccaggGCCCGGUCCAgGCuCUccAGCc- -3'
miRNA:   3'- uaCCGG-------------CGGGCCAGGUgCG-GA--UCGug -5'
29047 3' -63 NC_006146.1 + 48227 0.66 0.56605
Target:  5'- cUGGCgCGCCUGGgugagcgCCGCGCggAGgGCc -3'
miRNA:   3'- uACCG-GCGGGCCa------GGUGCGgaUCgUG- -5'
29047 3' -63 NC_006146.1 + 43336 0.67 0.546755
Target:  5'- -cGGCCGCCCaGGgCCA-GCa-GGCGCa -3'
miRNA:   3'- uaCCGGCGGG-CCaGGUgCGgaUCGUG- -5'
29047 3' -63 NC_006146.1 + 33433 0.67 0.518226
Target:  5'- --cGCCGCUCGGUCCugGggcuCCggguGCACc -3'
miRNA:   3'- uacCGGCGGGCCAGGugC----GGau--CGUG- -5'
29047 3' -63 NC_006146.1 + 70150 0.67 0.508846
Target:  5'- ---uUCGCCUGGcUCCugGCCggGGCGCu -3'
miRNA:   3'- uaccGGCGGGCC-AGGugCGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 33237 0.67 0.499538
Target:  5'- gGUGGCCGCCggcgGGUCCGCcggGCCgcuGCc- -3'
miRNA:   3'- -UACCGGCGGg---CCAGGUG---CGGau-CGug -5'
29047 3' -63 NC_006146.1 + 119260 0.68 0.481156
Target:  5'- cUGGCCcCCUGGgagUCCAgaGCCUggAGCACa -3'
miRNA:   3'- uACCGGcGGGCC---AGGUg-CGGA--UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.