miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 5' -57.1 NC_006146.1 + 65451 0.66 0.893755
Target:  5'- gAGGagGUGGGCACGacCACgCUGGCGGgcUGUg -3'
miRNA:   3'- -UCCa-CAUCCGUGC--GUG-GGCUGUC--ACA- -5'
29047 5' -57.1 NC_006146.1 + 45885 0.66 0.88708
Target:  5'- gGGGUuccGUAGgGCAUgagauuuucaGCGCCCGGcCGGUGa -3'
miRNA:   3'- -UCCA---CAUC-CGUG----------CGUGGGCU-GUCACa -5'
29047 5' -57.1 NC_006146.1 + 83775 0.66 0.880183
Target:  5'- uGGUGggAGGU-CGCAgucgacCCCGAUGGUGUu -3'
miRNA:   3'- uCCACa-UCCGuGCGU------GGGCUGUCACA- -5'
29047 5' -57.1 NC_006146.1 + 91780 0.66 0.873071
Target:  5'- gGGGUGccGuGCugGCACCCG-CGGg-- -3'
miRNA:   3'- -UCCACauC-CGugCGUGGGCuGUCaca -5'
29047 5' -57.1 NC_006146.1 + 89742 0.67 0.850485
Target:  5'- cAGGUGgu-GCAuCGgGCuCCGGCAGUGg -3'
miRNA:   3'- -UCCACaucCGU-GCgUG-GGCUGUCACa -5'
29047 5' -57.1 NC_006146.1 + 167761 0.67 0.84256
Target:  5'- aGGGgccggGUGGGCGCGCaugGCUCGAgacgcaCGGUGc -3'
miRNA:   3'- -UCCa----CAUCCGUGCG---UGGGCU------GUCACa -5'
29047 5' -57.1 NC_006146.1 + 134377 0.67 0.834447
Target:  5'- aAGGUGUGGGCACuguaGCACCCu------- -3'
miRNA:   3'- -UCCACAUCCGUG----CGUGGGcugucaca -5'
29047 5' -57.1 NC_006146.1 + 104440 0.67 0.826154
Target:  5'- aAGGUGgacagGGGCgGCGCcCUCGGCAGg-- -3'
miRNA:   3'- -UCCACa----UCCG-UGCGuGGGCUGUCaca -5'
29047 5' -57.1 NC_006146.1 + 74675 0.67 0.817688
Target:  5'- -----gGGGCAgGUACUCGACGGUGa -3'
miRNA:   3'- uccacaUCCGUgCGUGGGCUGUCACa -5'
29047 5' -57.1 NC_006146.1 + 30146 0.67 0.809056
Target:  5'- gGGGUGggcauGGcCACGCAUCCGAgAGcGg -3'
miRNA:   3'- -UCCACau---CC-GUGCGUGGGCUgUCaCa -5'
29047 5' -57.1 NC_006146.1 + 70565 0.67 0.809056
Target:  5'- uGGGuUGUGGGCAuCGUGCCCGucCGGg-- -3'
miRNA:   3'- -UCC-ACAUCCGU-GCGUGGGCu-GUCaca -5'
29047 5' -57.1 NC_006146.1 + 109023 0.68 0.791329
Target:  5'- aGGGUG-AGGCAUGCcucCCCaGAC-GUGUa -3'
miRNA:   3'- -UCCACaUCCGUGCGu--GGG-CUGuCACA- -5'
29047 5' -57.1 NC_006146.1 + 50788 0.68 0.78225
Target:  5'- uGGUGUGGGCACacggGCGUCCGuACGGUc- -3'
miRNA:   3'- uCCACAUCCGUG----CGUGGGC-UGUCAca -5'
29047 5' -57.1 NC_006146.1 + 94403 0.69 0.715493
Target:  5'- cAGGUGUGGGC-CGUgagGCuuGGCAGg-- -3'
miRNA:   3'- -UCCACAUCCGuGCG---UGggCUGUCaca -5'
29047 5' -57.1 NC_006146.1 + 149104 0.69 0.715493
Target:  5'- cGG---GGGCGCGCGCCCGGCAu--- -3'
miRNA:   3'- uCCacaUCCGUGCGUGGGCUGUcaca -5'
29047 5' -57.1 NC_006146.1 + 75371 0.7 0.695656
Target:  5'- aGGGacccUGgccAGGCGcCGCACCCGACAGc-- -3'
miRNA:   3'- -UCC----ACa--UCCGU-GCGUGGGCUGUCaca -5'
29047 5' -57.1 NC_006146.1 + 21247 0.72 0.534887
Target:  5'- -cGUGcAGGCGCGCugCCGGCGcGUGc -3'
miRNA:   3'- ucCACaUCCGUGCGugGGCUGU-CACa -5'
29047 5' -57.1 NC_006146.1 + 126183 0.74 0.468044
Target:  5'- gGGGgccaGUGGGCAgGCACCUGAUAGa-- -3'
miRNA:   3'- -UCCa---CAUCCGUgCGUGGGCUGUCaca -5'
29047 5' -57.1 NC_006146.1 + 86563 1.06 0.003644
Target:  5'- uAGGUGUAGGCACGCACCCGACAGUGUu -3'
miRNA:   3'- -UCCACAUCCGUGCGUGGGCUGUCACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.