miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29051 3' -50.8 NC_006146.1 + 170517 0.66 0.99463
Target:  5'- gCGCGCGGCGGGcgGGgccUGaggGGGCGcgGCGa -3'
miRNA:   3'- -GCGUGUCGUCU--UCaa-ACa--CCCGU--UGU- -5'
29051 3' -50.8 NC_006146.1 + 101711 0.66 0.992791
Target:  5'- aGagaGCAGCGGggGUUUGgcuccucGGGaCAAUg -3'
miRNA:   3'- gCg--UGUCGUCuuCAAACa------CCC-GUUGu -5'
29051 3' -50.8 NC_006146.1 + 68235 0.66 0.992791
Target:  5'- gGCACAGCGGggGag-GcGcGGCuGACAg -3'
miRNA:   3'- gCGUGUCGUCuuCaaaCaC-CCG-UUGU- -5'
29051 3' -50.8 NC_006146.1 + 167756 0.66 0.992791
Target:  5'- gGCGCAGgGGccGg--GUGGGCGcGCAu -3'
miRNA:   3'- gCGUGUCgUCuuCaaaCACCCGU-UGU- -5'
29051 3' -50.8 NC_006146.1 + 10890 0.66 0.992791
Target:  5'- --gACAGCGGGGcg--GUGGGCAAUg -3'
miRNA:   3'- gcgUGUCGUCUUcaaaCACCCGUUGu -5'
29051 3' -50.8 NC_006146.1 + 94951 0.66 0.9917
Target:  5'- cCGCuGCGGUAGAGGgggGUGuGCAGCc -3'
miRNA:   3'- -GCG-UGUCGUCUUCaaaCACcCGUUGu -5'
29051 3' -50.8 NC_006146.1 + 59052 0.66 0.990091
Target:  5'- gGCGCAGCGGGccgacacgcaGGGCGACGa -3'
miRNA:   3'- gCGUGUCGUCUucaaaca---CCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 43615 0.67 0.989129
Target:  5'- gGguCGGgGGAAGagggaGUGGGCGGCGg -3'
miRNA:   3'- gCguGUCgUCUUCaaa--CACCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 55759 0.67 0.987629
Target:  5'- cCGCcCGGCGGcGGgccagGGGCAGCGa -3'
miRNA:   3'- -GCGuGUCGUCuUCaaacaCCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 108857 0.67 0.985975
Target:  5'- uGguCAGC-GAGGU--GUGGGUGACAg -3'
miRNA:   3'- gCguGUCGuCUUCAaaCACCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 51156 0.67 0.985975
Target:  5'- --aGCGGCAGAGGgcgccgcUGUGGGUGugGa -3'
miRNA:   3'- gcgUGUCGUCUUCaa-----ACACCCGUugU- -5'
29051 3' -50.8 NC_006146.1 + 132249 0.67 0.984156
Target:  5'- aGCGCAGCAGAGaaa----GGCAGCAg -3'
miRNA:   3'- gCGUGUCGUCUUcaaacacCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 116293 0.67 0.984156
Target:  5'- cCGCACGGguGAA---UGUgGGGCAGg- -3'
miRNA:   3'- -GCGUGUCguCUUcaaACA-CCCGUUgu -5'
29051 3' -50.8 NC_006146.1 + 44015 0.68 0.977623
Target:  5'- uGCGCGGCgGGGAGg----GGGCGGCc -3'
miRNA:   3'- gCGUGUCG-UCUUCaaacaCCCGUUGu -5'
29051 3' -50.8 NC_006146.1 + 55268 0.68 0.977623
Target:  5'- gGCgaaGCGGCucguGggGcucgcgGUGGGCAGCAg -3'
miRNA:   3'- gCG---UGUCGu---CuuCaaa---CACCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 63738 0.69 0.966409
Target:  5'- --gACGGCGGAGGcgacguguuucugGUGGGCGACGu -3'
miRNA:   3'- gcgUGUCGUCUUCaaa----------CACCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 70548 0.69 0.965744
Target:  5'- gGCGguGguGggGUauaugggUUGUGGGCAuCGu -3'
miRNA:   3'- gCGUguCguCuuCA-------AACACCCGUuGU- -5'
29051 3' -50.8 NC_006146.1 + 90106 0.69 0.962634
Target:  5'- aGCGgAGCAGGAGgcaGUGGaGCAggagGCAg -3'
miRNA:   3'- gCGUgUCGUCUUCaaaCACC-CGU----UGU- -5'
29051 3' -50.8 NC_006146.1 + 86253 0.69 0.955033
Target:  5'- gGUugACAGCAGGcac--GUGGGCAGCAc -3'
miRNA:   3'- gCG--UGUCGUCUucaaaCACCCGUUGU- -5'
29051 3' -50.8 NC_006146.1 + 41483 0.69 0.950865
Target:  5'- uCGUGCAgauGCGGGAGUUUGUggucugGGGCAGg- -3'
miRNA:   3'- -GCGUGU---CGUCUUCAAACA------CCCGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.