miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29052 5' -54.9 NC_006146.1 + 4672 0.71 0.728725
Target:  5'- gGGCCgggUGGGCGAGGCGGGGGcagaucagauGUUUGAg -3'
miRNA:   3'- -CUGG---ACUCGCUCUGUCUCCu---------CAGACU- -5'
29052 5' -54.9 NC_006146.1 + 13314 0.67 0.910443
Target:  5'- cGugCUGGGCaccaGGGCGGuGGAGUCg-- -3'
miRNA:   3'- -CugGACUCGc---UCUGUCuCCUCAGacu -5'
29052 5' -54.9 NC_006146.1 + 15290 0.72 0.698712
Target:  5'- aACCgGAGCGAGGgGGAGGAGgggCcgGAg -3'
miRNA:   3'- cUGGaCUCGCUCUgUCUCCUCa--Ga-CU- -5'
29052 5' -54.9 NC_006146.1 + 15937 0.71 0.728725
Target:  5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3'
miRNA:   3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5'
29052 5' -54.9 NC_006146.1 + 19014 0.71 0.728725
Target:  5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3'
miRNA:   3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5'
29052 5' -54.9 NC_006146.1 + 22092 0.71 0.728725
Target:  5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3'
miRNA:   3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5'
29052 5' -54.9 NC_006146.1 + 25170 0.71 0.728725
Target:  5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3'
miRNA:   3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5'
29052 5' -54.9 NC_006146.1 + 28248 0.71 0.728725
Target:  5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3'
miRNA:   3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5'
29052 5' -54.9 NC_006146.1 + 36643 0.66 0.93268
Target:  5'- gGACCUGuGUGaAGGCGcGGGGGuucUCUGAg -3'
miRNA:   3'- -CUGGACuCGC-UCUGUcUCCUC---AGACU- -5'
29052 5' -54.9 NC_006146.1 + 40467 0.66 0.942354
Target:  5'- uGGCCUGgugggugaAGgGGGGCAGAGGGGcCg-- -3'
miRNA:   3'- -CUGGAC--------UCgCUCUGUCUCCUCaGacu -5'
29052 5' -54.9 NC_006146.1 + 45152 0.68 0.862496
Target:  5'- cGGgCUGGGUGGGACGGAGGccUCgGAa -3'
miRNA:   3'- -CUgGACUCGCUCUGUCUCCucAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 45544 0.69 0.830386
Target:  5'- uGACCaGGGCcAGGCAGGGGAGg--GAa -3'
miRNA:   3'- -CUGGaCUCGcUCUGUCUCCUCagaCU- -5'
29052 5' -54.9 NC_006146.1 + 51224 0.66 0.942353
Target:  5'- uGCUUGGG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51254 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51284 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51314 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51344 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51374 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 51404 0.68 0.884403
Target:  5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3'
miRNA:   3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5'
29052 5' -54.9 NC_006146.1 + 52515 0.66 0.951075
Target:  5'- aGAUCUGGGCGGGAaAGAGGAc----- -3'
miRNA:   3'- -CUGGACUCGCUCUgUCUCCUcagacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.