Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29052 | 5' | -54.9 | NC_006146.1 | + | 19014 | 0.71 | 0.728725 |
Target: 5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3' miRNA: 3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 51374 | 0.68 | 0.884403 |
Target: 5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3' miRNA: 3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 89400 | 0.68 | 0.891261 |
Target: 5'- aGCgaUGGG-GGGAUGGAGGAGUUUGAg -3' miRNA: 3'- cUGg-ACUCgCUCUGUCUCCUCAGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 58411 | 0.66 | 0.951075 |
Target: 5'- gGACCgcuaucucuaUGAGCGcGcCGGGGuGGGUCUGGg -3' miRNA: 3'- -CUGG----------ACUCGCuCuGUCUC-CUCAGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 167495 | 0.71 | 0.728725 |
Target: 5'- uGCCUG-GCGGGGgAGAGGGGgcagggCUGGc -3' miRNA: 3'- cUGGACuCGCUCUgUCUCCUCa-----GACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 168427 | 0.71 | 0.728725 |
Target: 5'- uGCCUG-GCGGGGgAGAGGGGgcagggCUGGc -3' miRNA: 3'- cUGGACuCGCUCUgUCUCCUCa-----GACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 92610 | 1.09 | 0.003782 |
Target: 5'- aGACCUGAGCGAGACAGAGGAGUCUGAg -3' miRNA: 3'- -CUGGACUCGCUCUGUCUCCUCAGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 130137 | 0.72 | 0.678406 |
Target: 5'- aGACCcucaGGCGGGACAGGGGAGUg--- -3' miRNA: 3'- -CUGGac--UCGCUCUGUCUCCUCAgacu -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 4672 | 0.71 | 0.728725 |
Target: 5'- gGGCCgggUGGGCGAGGCGGGGGcagaucagauGUUUGAg -3' miRNA: 3'- -CUGG---ACUCGCUCUGUCUCCu---------CAGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 51344 | 0.68 | 0.884403 |
Target: 5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3' miRNA: 3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 51254 | 0.68 | 0.884403 |
Target: 5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3' miRNA: 3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 45152 | 0.68 | 0.862496 |
Target: 5'- cGGgCUGGGUGGGACGGAGGccUCgGAa -3' miRNA: 3'- -CUgGACUCGCUCUGUCUCCucAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 22092 | 0.71 | 0.728725 |
Target: 5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3' miRNA: 3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 51284 | 0.68 | 0.884403 |
Target: 5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3' miRNA: 3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 25170 | 0.71 | 0.728725 |
Target: 5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3' miRNA: 3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 170290 | 0.71 | 0.728725 |
Target: 5'- uGCCUG-GCGGGGgAGAGGGGgcagggCUGGc -3' miRNA: 3'- cUGGACuCGCUCUgUCUCCUCa-----GACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 51314 | 0.68 | 0.884403 |
Target: 5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3' miRNA: 3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 51404 | 0.68 | 0.884403 |
Target: 5'- cGCUUGAG-GGGGCuGAGGAGUUgGAg -3' miRNA: 3'- cUGGACUCgCUCUGuCUCCUCAGaCU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 28248 | 0.71 | 0.728725 |
Target: 5'- cGCCUGGGCGAGGCuGGGuGG-CUGGg -3' miRNA: 3'- cUGGACUCGCUCUGuCUCcUCaGACU- -5' |
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29052 | 5' | -54.9 | NC_006146.1 | + | 169359 | 0.71 | 0.728725 |
Target: 5'- uGCCUG-GCGGGGgAGAGGGGgcagggCUGGc -3' miRNA: 3'- cUGGACuCGCUCUgUCUCCUCa-----GACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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