Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29058 | 5' | -62.3 | NC_006146.1 | + | 816 | 0.7 | 0.41895 |
Target: 5'- gGCgC-CGGCcCCUcccgcCGGCCAUCCCCa -3' miRNA: 3'- gCGaGaGCCGaGGA-----GCCGGUAGGGGc -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 845 | 0.67 | 0.610805 |
Target: 5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3' miRNA: 3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 1748 | 0.7 | 0.41895 |
Target: 5'- gGCgC-CGGCcCCUcccgcCGGCCAUCCCCa -3' miRNA: 3'- gCGaGaGCCGaGGA-----GCCGGUAGGGGc -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 1777 | 0.67 | 0.610805 |
Target: 5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3' miRNA: 3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 2680 | 0.7 | 0.41895 |
Target: 5'- gGCgC-CGGCcCCUcccgcCGGCCAUCCCCa -3' miRNA: 3'- gCGaGaGCCGaGGA-----GCCGGUAGGGGc -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 2709 | 0.67 | 0.610805 |
Target: 5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3' miRNA: 3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 3612 | 0.7 | 0.41895 |
Target: 5'- gGCgC-CGGCcCCUcccgcCGGCCAUCCCCa -3' miRNA: 3'- gCGaGaGCCGaGGA-----GCCGGUAGGGGc -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 3641 | 0.67 | 0.610805 |
Target: 5'- aCGCg--CGGCcCCg-GGCCcUCCCCGa -3' miRNA: 3'- -GCGagaGCCGaGGagCCGGuAGGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 10239 | 0.66 | 0.659191 |
Target: 5'- uGUgC-CGGCUCCUgaaGGCC-UCCCUGa -3' miRNA: 3'- gCGaGaGCCGAGGAg--CCGGuAGGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 13704 | 0.68 | 0.531611 |
Target: 5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3' miRNA: 3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 16782 | 0.68 | 0.531611 |
Target: 5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3' miRNA: 3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 19860 | 0.68 | 0.531611 |
Target: 5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3' miRNA: 3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 22938 | 0.69 | 0.524149 |
Target: 5'- cCGCUUUCGGCcUCUcgguccaccaggcCGGCCGgagggaCCCCGg -3' miRNA: 3'- -GCGAGAGCCGaGGA-------------GCCGGUa-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 23443 | 0.7 | 0.41895 |
Target: 5'- aGCUC-CGGCUgcccgUCUCGGCCuacgaggCCCUGg -3' miRNA: 3'- gCGAGaGCCGA-----GGAGCCGGua-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 26015 | 0.68 | 0.531611 |
Target: 5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3' miRNA: 3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 29093 | 0.68 | 0.531611 |
Target: 5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3' miRNA: 3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 39796 | 0.7 | 0.4608 |
Target: 5'- aGCUCcCGGCUUCUgggacggCGGCCGUUgacggCCCGg -3' miRNA: 3'- gCGAGaGCCGAGGA-------GCCGGUAG-----GGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 47885 | 0.67 | 0.591505 |
Target: 5'- cCGC-CUCGGC--CUCGGUCAgcgCUCCGa -3' miRNA: 3'- -GCGaGAGCCGagGAGCCGGUa--GGGGC- -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 48087 | 0.69 | 0.5011 |
Target: 5'- uCGCUCaCGGCggccgacagcgcggCCUCGGCCG-CCCg- -3' miRNA: 3'- -GCGAGaGCCGa-------------GGAGCCGGUaGGGgc -5' |
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29058 | 5' | -62.3 | NC_006146.1 | + | 48396 | 0.69 | 0.515802 |
Target: 5'- gGCUCcgCGGcCUCCauucucUCGaccccgccGCCGUCCCCGa -3' miRNA: 3'- gCGAGa-GCC-GAGG------AGC--------CGGUAGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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