miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29058 5' -62.3 NC_006146.1 + 95630 1.08 0.001146
Target:  5'- aCGCUCUCGGCUCCUCGGCCAUCCCCGu -3'
miRNA:   3'- -GCGAGAGCCGAGGAGCCGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 16782 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 26015 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 118638 0.66 0.688043
Target:  5'- cCGCUgCUugcUGGgUCUcCGGCCGUCUCCa -3'
miRNA:   3'- -GCGA-GA---GCCgAGGaGCCGGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 155175 0.71 0.405792
Target:  5'- uGCUgggCGGaggaaacagcccccuCUCCUCGGCCAguggCCCCGu -3'
miRNA:   3'- gCGAga-GCC---------------GAGGAGCCGGUa---GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 95414 0.7 0.41895
Target:  5'- uGCUCUugcCGGC-CC-CcGCCGUCCCCGu -3'
miRNA:   3'- gCGAGA---GCCGaGGaGcCGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 65062 0.7 0.444304
Target:  5'- aGCUCUUGGCagcgccUCCggaugUCGGCCGgggaCCCCu -3'
miRNA:   3'- gCGAGAGCCG------AGG-----AGCCGGUa---GGGGc -5'
29058 5' -62.3 NC_006146.1 + 96635 0.7 0.444304
Target:  5'- cCGCaacCGGCUCUUUGGCCAg-CCCGg -3'
miRNA:   3'- -GCGagaGCCGAGGAGCCGGUagGGGC- -5'
29058 5' -62.3 NC_006146.1 + 48087 0.69 0.5011
Target:  5'- uCGCUCaCGGCggccgacagcgcggCCUCGGCCG-CCCg- -3'
miRNA:   3'- -GCGAGaGCCGa-------------GGAGCCGGUaGGGgc -5'
29058 5' -62.3 NC_006146.1 + 13704 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 48396 0.69 0.515802
Target:  5'- gGCUCcgCGGcCUCCauucucUCGaccccgccGCCGUCCCCGa -3'
miRNA:   3'- gCGAGa-GCC-GAGG------AGC--------CGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 100892 0.69 0.479401
Target:  5'- -cCUgUCGGCcugggUCUCGGCCgugggGUCCCCGa -3'
miRNA:   3'- gcGAgAGCCGa----GGAGCCGG-----UAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 149275 0.81 0.098223
Target:  5'- cCGCUCcgcguaggcCGGgUCCUCGGCCAUCUCCGu -3'
miRNA:   3'- -GCGAGa--------GCCgAGGAGCCGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 22938 0.69 0.524149
Target:  5'- cCGCUUUCGGCcUCUcgguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA-------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 156043 0.72 0.34115
Target:  5'- aGCUCccUGGCUgcccCCUCGGCCucccgcggCCCCGg -3'
miRNA:   3'- gCGAGa-GCCGA----GGAGCCGGua------GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 110445 0.7 0.449477
Target:  5'- cCGCUCcccgCGGCcugccgcUCaCUCGGCCAUggucugacauuccaCCCCGg -3'
miRNA:   3'- -GCGAGa---GCCG-------AG-GAGCCGGUA--------------GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 86734 0.69 0.52508
Target:  5'- uCGCUaC-CGGCaUUCUCGGcCCGUCUCCu -3'
miRNA:   3'- -GCGA-GaGCCG-AGGAGCC-GGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 19860 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 68488 0.71 0.378712
Target:  5'- gGCUa-UGGCUCUUUGGCCG-CCCCa -3'
miRNA:   3'- gCGAgaGCCGAGGAGCCGGUaGGGGc -5'
29058 5' -62.3 NC_006146.1 + 140750 0.7 0.435756
Target:  5'- cCGCUCUCGGaugcgUGGCCAUgCCCa -3'
miRNA:   3'- -GCGAGAGCCgaggaGCCGGUAgGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.