miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29059 5' -53.8 NC_006146.1 + 98295 0.7 0.8493
Target:  5'- aGGCgGUGggGCUGAgggCGUGCuccGUGGCc -3'
miRNA:   3'- gCUGgUACuuCGACUg--GCACG---CACUG- -5'
29059 5' -53.8 NC_006146.1 + 79871 0.67 0.956473
Target:  5'- cCGcCUAUGAAGCUG-UCGUG-GUGAg -3'
miRNA:   3'- -GCuGGUACUUCGACuGGCACgCACUg -5'
29059 5' -53.8 NC_006146.1 + 165899 0.66 0.960184
Target:  5'- gGACCAcugcaaaGGAGCUgagGACUGUGC-UGGCa -3'
miRNA:   3'- gCUGGUa------CUUCGA---CUGGCACGcACUG- -5'
29059 5' -53.8 NC_006146.1 + 60269 0.66 0.966938
Target:  5'- -uGCCAUGuccAAGUUGuuguaCGUGCGUGAUc -3'
miRNA:   3'- gcUGGUAC---UUCGACug---GCACGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 170679 0.68 0.90635
Target:  5'- aGGCCA-GggGCgccccgggGACCGUcGCGggGGCa -3'
miRNA:   3'- gCUGGUaCuuCGa-------CUGGCA-CGCa-CUG- -5'
29059 5' -53.8 NC_006146.1 + 95928 1.1 0.00482
Target:  5'- aCGACCAUGAAGCUGACCGUGCGUGACc -3'
miRNA:   3'- -GCUGGUACUUCGACUGGCACGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 75637 0.75 0.609
Target:  5'- aGGCCAUauagcuugcaGAGGCcaagGACCGUGCGUG-Cg -3'
miRNA:   3'- gCUGGUA----------CUUCGa---CUGGCACGCACuG- -5'
29059 5' -53.8 NC_006146.1 + 65477 0.72 0.741252
Target:  5'- gGGCUGUGcgggugcuGAGCUGGCCG-GCGUGGg -3'
miRNA:   3'- gCUGGUAC--------UUCGACUGGCaCGCACUg -5'
29059 5' -53.8 NC_006146.1 + 100908 0.72 0.77019
Target:  5'- uCGGCCGUGggGUccccGACCGUGCuguucuUGGCc -3'
miRNA:   3'- -GCUGGUACuuCGa---CUGGCACGc-----ACUG- -5'
29059 5' -53.8 NC_006146.1 + 170352 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 167557 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 46771 0.67 0.939307
Target:  5'- cCGACCccGGgcggauGGCUGGCCGgccgGCGcgagGGCa -3'
miRNA:   3'- -GCUGGuaCU------UCGACUGGCa---CGCa---CUG- -5'
29059 5' -53.8 NC_006146.1 + 161675 0.7 0.8493
Target:  5'- gGugCGUGuguguGCuaauUGGCCGUGUGUGAUg -3'
miRNA:   3'- gCugGUACuu---CG----ACUGGCACGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 168489 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 95241 0.7 0.857193
Target:  5'- gCGGCCAUGAcuGCUGACCcgcgGCGUcauauuuauguGGCg -3'
miRNA:   3'- -GCUGGUACUu-CGACUGGca--CGCA-----------CUG- -5'
29059 5' -53.8 NC_006146.1 + 42607 0.68 0.918303
Target:  5'- gCGACCA-GAAGgaGAagcaCGUGC-UGACg -3'
miRNA:   3'- -GCUGGUaCUUCgaCUg---GCACGcACUG- -5'
29059 5' -53.8 NC_006146.1 + 169421 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 102385 0.66 0.960184
Target:  5'- uGGCUAUGGAGUUGACuCGUcGCc-GGCa -3'
miRNA:   3'- gCUGGUACUUCGACUG-GCA-CGcaCUG- -5'
29059 5' -53.8 NC_006146.1 + 44711 0.69 0.872353
Target:  5'- uGGCCGUGGcccccGCUGGCCGgccugaUGCgGUGGCc -3'
miRNA:   3'- gCUGGUACUu----CGACUGGC------ACG-CACUG- -5'
29059 5' -53.8 NC_006146.1 + 5092 0.68 0.918303
Target:  5'- gCGGCCAggGAcgccccccuAGCcGGCCGUGCcaccGUGGCu -3'
miRNA:   3'- -GCUGGUa-CU---------UCGaCUGGCACG----CACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.