Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29059 | 5' | -53.8 | NC_006146.1 | + | 5092 | 0.68 | 0.918303 |
Target: 5'- gCGGCCAggGAcgccccccuAGCcGGCCGUGCcaccGUGGCu -3' miRNA: 3'- -GCUGGUa-CU---------UCGaCUGGCACG----CACUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 14158 | 0.74 | 0.6193 |
Target: 5'- uGGCCGUGGAGCUGAgCGUcuGCGccaGGCu -3' miRNA: 3'- gCUGGUACUUCGACUgGCA--CGCa--CUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 14548 | 0.69 | 0.900014 |
Target: 5'- gGGCCcUGGAGCUGcuggGCCGcuuucgggGCGUGAg -3' miRNA: 3'- gCUGGuACUUCGAC----UGGCa-------CGCACUg -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 42607 | 0.68 | 0.918303 |
Target: 5'- gCGACCA-GAAGgaGAagcaCGUGC-UGACg -3' miRNA: 3'- -GCUGGUaCUUCgaCUg---GCACGcACUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 44711 | 0.69 | 0.872353 |
Target: 5'- uGGCCGUGGcccccGCUGGCCGgccugaUGCgGUGGCc -3' miRNA: 3'- gCUGGUACUu----CGACUGGC------ACG-CACUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 46771 | 0.67 | 0.939307 |
Target: 5'- cCGACCccGGgcggauGGCUGGCCGgccgGCGcgagGGCa -3' miRNA: 3'- -GCUGGuaCU------UCGACUGGCa---CGCa---CUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 47120 | 0.66 | 0.96367 |
Target: 5'- aGGCCAgGAAGCucugcuUGGCCGagGCGUaGCg -3' miRNA: 3'- gCUGGUaCUUCG------ACUGGCa-CGCAcUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 52901 | 0.72 | 0.77019 |
Target: 5'- aCGGCCGUG-AGCUacGGCCGUGUGaUGcGCa -3' miRNA: 3'- -GCUGGUACuUCGA--CUGGCACGC-AC-UG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 56683 | 0.67 | 0.948362 |
Target: 5'- gGGCCcccUGggGCUGGCCcUGCuG-GACa -3' miRNA: 3'- gCUGGu--ACuuCGACUGGcACG-CaCUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 59323 | 0.73 | 0.681019 |
Target: 5'- uGGCCGaGAGGCUGGCgGUGU-UGACg -3' miRNA: 3'- gCUGGUaCUUCGACUGgCACGcACUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 60269 | 0.66 | 0.966938 |
Target: 5'- -uGCCAUGuccAAGUUGuuguaCGUGCGUGAUc -3' miRNA: 3'- gcUGGUAC---UUCGACug---GCACGCACUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 65477 | 0.72 | 0.741252 |
Target: 5'- gGGCUGUGcgggugcuGAGCUGGCCG-GCGUGGg -3' miRNA: 3'- gCUGGUAC--------UUCGACUGGCaCGCACUg -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 66107 | 0.67 | 0.939307 |
Target: 5'- gGGCCGggGGAGCUacggGGCCGUGUauGUGuACg -3' miRNA: 3'- gCUGGUa-CUUCGA----CUGGCACG--CAC-UG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 70649 | 0.72 | 0.751007 |
Target: 5'- --uCCAUGGAGCcc-CCGUGCGUGAa -3' miRNA: 3'- gcuGGUACUUCGacuGGCACGCACUg -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 75637 | 0.75 | 0.609 |
Target: 5'- aGGCCAUauagcuugcaGAGGCcaagGACCGUGCGUG-Cg -3' miRNA: 3'- gCUGGUA----------CUUCGa---CUGGCACGCACuG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 76401 | 0.69 | 0.900014 |
Target: 5'- gGACCG-GggGCgccGACgGcgGCGUGACc -3' miRNA: 3'- gCUGGUaCuuCGa--CUGgCa-CGCACUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 79871 | 0.67 | 0.956473 |
Target: 5'- cCGcCUAUGAAGCUG-UCGUG-GUGAg -3' miRNA: 3'- -GCuGGUACUUCGACuGGCACgCACUg -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 85386 | 0.68 | 0.93442 |
Target: 5'- -cGCCA-GAAGCcggGACCG-GCGUGGa -3' miRNA: 3'- gcUGGUaCUUCGa--CUGGCaCGCACUg -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 95241 | 0.7 | 0.857193 |
Target: 5'- gCGGCCAUGAcuGCUGACCcgcgGCGUcauauuuauguGGCg -3' miRNA: 3'- -GCUGGUACUu-CGACUGGca--CGCA-----------CUG- -5' |
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29059 | 5' | -53.8 | NC_006146.1 | + | 95928 | 1.1 | 0.00482 |
Target: 5'- aCGACCAUGAAGCUGACCGUGCGUGACc -3' miRNA: 3'- -GCUGGUACUUCGACUGGCACGCACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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