miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29059 5' -53.8 NC_006146.1 + 98295 0.7 0.8493
Target:  5'- aGGCgGUGggGCUGAgggCGUGCuccGUGGCc -3'
miRNA:   3'- gCUGgUACuuCGACUg--GCACG---CACUG- -5'
29059 5' -53.8 NC_006146.1 + 100908 0.72 0.77019
Target:  5'- uCGGCCGUGggGUccccGACCGUGCuguucuUGGCc -3'
miRNA:   3'- -GCUGGUACuuCGa---CUGGCACGc-----ACUG- -5'
29059 5' -53.8 NC_006146.1 + 102385 0.66 0.960184
Target:  5'- uGGCUAUGGAGUUGACuCGUcGCc-GGCa -3'
miRNA:   3'- gCUGGUACUUCGACUG-GCA-CGcaCUG- -5'
29059 5' -53.8 NC_006146.1 + 108630 0.66 0.969992
Target:  5'- aGGCgGUGGugaaggagauGGaCUGACCGUGUGUcuggGGCg -3'
miRNA:   3'- gCUGgUACU----------UC-GACUGGCACGCA----CUG- -5'
29059 5' -53.8 NC_006146.1 + 115007 0.66 0.972838
Target:  5'- uGGCCGUGGAGCUGGUgGaGCGggGAg -3'
miRNA:   3'- gCUGGUACUUCGACUGgCaCGCa-CUg -5'
29059 5' -53.8 NC_006146.1 + 115345 0.69 0.893443
Target:  5'- uCGGUCAUcGAGGCcuuccUGGCCG-GCGUGGCg -3'
miRNA:   3'- -GCUGGUA-CUUCG-----ACUGGCaCGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 115512 0.67 0.956473
Target:  5'- -cGCCGUGAuGCUGGCCucgGUGCcccgGGCg -3'
miRNA:   3'- gcUGGUACUuCGACUGG---CACGca--CUG- -5'
29059 5' -53.8 NC_006146.1 + 121344 0.78 0.432761
Target:  5'- aGGCCAUGcuGGGcCUGGCCG-GCGUGGCc -3'
miRNA:   3'- gCUGGUAC--UUC-GACUGGCaCGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 139660 0.67 0.948362
Target:  5'- aGGCCugcAUGGAGCccacggaGACUGUGUGUGGu -3'
miRNA:   3'- gCUGG---UACUUCGa------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 159312 0.71 0.798004
Target:  5'- gGGCCAggagucguaguUGAGGCUGGCCG-GCGUc-- -3'
miRNA:   3'- gCUGGU-----------ACUUCGACUGGCaCGCAcug -5'
29059 5' -53.8 NC_006146.1 + 161675 0.7 0.8493
Target:  5'- gGugCGUGuguguGCuaauUGGCCGUGUGUGAUg -3'
miRNA:   3'- gCugGUACuu---CG----ACUGGCACGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 165899 0.66 0.960184
Target:  5'- gGACCAcugcaaaGGAGCUgagGACUGUGC-UGGCa -3'
miRNA:   3'- gCUGGUa------CUUCGA---CUGGCACGcACUG- -5'
29059 5' -53.8 NC_006146.1 + 166921 0.67 0.941195
Target:  5'- uCGACCAUGGccAGCUuggugcccucuaucgGAUCcaGCGUGACc -3'
miRNA:   3'- -GCUGGUACU--UCGA---------------CUGGcaCGCACUG- -5'
29059 5' -53.8 NC_006146.1 + 167557 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 168489 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 169421 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 170352 0.67 0.948362
Target:  5'- aGGCCAcgugugGAGGCccgcggagaGGCCGUGUGUGGa -3'
miRNA:   3'- gCUGGUa-----CUUCGa--------CUGGCACGCACUg -5'
29059 5' -53.8 NC_006146.1 + 170679 0.68 0.90635
Target:  5'- aGGCCA-GggGCgccccgggGACCGUcGCGggGGCa -3'
miRNA:   3'- gCUGGUaCuuCGa-------CUGGCA-CGCa-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.