miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 5' -56.3 NC_006146.1 + 12278 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 12893 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 15357 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 15970 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 18435 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 19048 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 21513 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 22126 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 24591 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 25204 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 27669 0.66 0.910045
Target:  5'- -gUCUAGuCugGGUGGgaucaggcuaaccCAAGUcGCCUCa -3'
miRNA:   3'- agAGGUC-GugCCACCa------------GUUCA-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 28282 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 37758 0.66 0.912434
Target:  5'- gUCUCCGGgAUGuGUaGGg-AGGUGCCUUg -3'
miRNA:   3'- -AGAGGUCgUGC-CA-CCagUUCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 39131 0.66 0.910645
Target:  5'- aUUCCgcguuuaaaacgauAGCAUGGUGGcCGGGU-CCUCc -3'
miRNA:   3'- aGAGG--------------UCGUGCCACCaGUUCAcGGAG- -5'
29061 5' -56.3 NC_006146.1 + 46823 0.72 0.581451
Target:  5'- uUCUCCAGCACGGUGGgCA--UGacguaCUCc -3'
miRNA:   3'- -AGAGGUCGUGCCACCaGUucACg----GAG- -5'
29061 5' -56.3 NC_006146.1 + 47665 0.7 0.703501
Target:  5'- --cCCAGCGCGGcGGcCAGG-GUCUCg -3'
miRNA:   3'- agaGGUCGUGCCaCCaGUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 50869 0.71 0.632413
Target:  5'- gUCUCC-GCGCGG-GGUCu-GUGCC-Cg -3'
miRNA:   3'- -AGAGGuCGUGCCaCCAGuuCACGGaG- -5'
29061 5' -56.3 NC_006146.1 + 52439 0.66 0.893601
Target:  5'- cCUCCAGUuuGG-GGUCGacgcccuggagAGggGCCUCa -3'
miRNA:   3'- aGAGGUCGugCCaCCAGU-----------UCa-CGGAG- -5'
29061 5' -56.3 NC_006146.1 + 52701 0.66 0.912434
Target:  5'- gCUCCGG-GCGGgaGGUCAGGgggcgGCCg- -3'
miRNA:   3'- aGAGGUCgUGCCa-CCAGUUCa----CGGag -5'
29061 5' -56.3 NC_006146.1 + 53441 0.66 0.904531
Target:  5'- -aUCCgaaAGgGCGGUGGUgucugcccgggaggCGcgGGUGCCUCg -3'
miRNA:   3'- agAGG---UCgUGCCACCA--------------GU--UCACGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.