miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29061 5' -56.3 NC_006146.1 + 54419 0.67 0.872716
Target:  5'- gCUCCucCGCGGUGGagAGG-GUCUCg -3'
miRNA:   3'- aGAGGucGUGCCACCagUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 47665 0.7 0.703501
Target:  5'- --cCCAGCGCGGcGGcCAGG-GUCUCg -3'
miRNA:   3'- agaGGUCGUGCCaCCaGUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 54033 0.7 0.704503
Target:  5'- cCUCCGGagggcggccaugucgGCGGUGGUCAGG-GCC-Ca -3'
miRNA:   3'- aGAGGUCg--------------UGCCACCAGUUCaCGGaG- -5'
29061 5' -56.3 NC_006146.1 + 101075 0.69 0.780937
Target:  5'- cUCgCCGGuCugGGUGGUCAAG-GCUc- -3'
miRNA:   3'- -AGaGGUC-GugCCACCAGUUCaCGGag -5'
29061 5' -56.3 NC_006146.1 + 12893 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 15970 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 19048 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 22126 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 25204 0.68 0.826156
Target:  5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3'
miRNA:   3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 109544 0.71 0.632413
Target:  5'- cCUCCucgcaguacacgGGCACGcUGGUgaAGGUGCCUCg -3'
miRNA:   3'- aGAGG------------UCGUGCcACCAg-UUCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 46823 0.72 0.581451
Target:  5'- uUCUCCAGCACGGUGGgCA--UGacguaCUCc -3'
miRNA:   3'- -AGAGGUCGUGCCACCaGUucACg----GAG- -5'
29061 5' -56.3 NC_006146.1 + 142686 0.73 0.511781
Target:  5'- cCUCCGGCugGGUcggacGGUCuGGUGCgUUg -3'
miRNA:   3'- aGAGGUCGugCCA-----CCAGuUCACGgAG- -5'
29061 5' -56.3 NC_006146.1 + 107289 0.66 0.879899
Target:  5'- aUCUCCAGCACc---GUCAuguGUGCCa- -3'
miRNA:   3'- -AGAGGUCGUGccacCAGUu--CACGGag -5'
29061 5' -56.3 NC_006146.1 + 53441 0.66 0.904531
Target:  5'- -aUCCgaaAGgGCGGUGGUgucugcccgggaggCGcgGGUGCCUCg -3'
miRNA:   3'- agAGG---UCgUGCCACCA--------------GU--UCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 112449 0.66 0.886862
Target:  5'- cCUCCGGCcguGGUGGUCAcuGG-GCUUg -3'
miRNA:   3'- aGAGGUCGug-CCACCAGU--UCaCGGAg -5'
29061 5' -56.3 NC_006146.1 + 103678 0.66 0.900111
Target:  5'- -aUCUGGgGCGGgcGGUCGAG-GUCUCg -3'
miRNA:   3'- agAGGUCgUGCCa-CCAGUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 52701 0.66 0.912434
Target:  5'- gCUCCGG-GCGGgaGGUCAGGgggcgGCCg- -3'
miRNA:   3'- aGAGGUCgUGCCa-CCAGUUCa----CGGag -5'
29061 5' -56.3 NC_006146.1 + 96693 1.11 0.002151
Target:  5'- gUCUCCAGCACGGUGGUCAAGUGCCUCa -3'
miRNA:   3'- -AGAGGUCGUGCCACCAGUUCACGGAG- -5'
29061 5' -56.3 NC_006146.1 + 113410 0.75 0.410301
Target:  5'- --aCCAGCGCGGUggcucGGUCAGG-GUCUCg -3'
miRNA:   3'- agaGGUCGUGCCA-----CCAGUUCaCGGAG- -5'
29061 5' -56.3 NC_006146.1 + 142877 0.74 0.454947
Target:  5'- cCUCCGGCugGGUcggacGGUCuGGUGCgCUUg -3'
miRNA:   3'- aGAGGUCGugCCA-----CCAGuUCACG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.