miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 102804 0.66 0.649524
Target:  5'- gGCuGGCCGCCCaCCUGgaucgcgcGGGGGCUCUGc -3'
miRNA:   3'- gUG-UUGGUGGGcGGGC--------CCCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 34604 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34511 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34418 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33953 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34046 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34139 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34232 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 114518 0.66 0.649524
Target:  5'- aGCGGCCACgCuuaCCCGGcGGcgguGCUCCGc -3'
miRNA:   3'- gUGUUGGUGgGc--GGGCC-CCu---CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 34325 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 122846 0.66 0.648557
Target:  5'- --gGACCGCacgCUGCCCGGGGcGCUggacgacCCGa -3'
miRNA:   3'- gugUUGGUG---GGCGGGCCCCuCGA-------GGC- -5'
29064 5' -62.6 NC_006146.1 + 55820 0.66 0.639846
Target:  5'- gUACAGCCAgC-GCCUGGGuGGGCacCCGg -3'
miRNA:   3'- -GUGUUGGUgGgCGGGCCC-CUCGa-GGC- -5'
29064 5' -62.6 NC_006146.1 + 136725 0.66 0.639846
Target:  5'- -cCGGCCGCugccggguccgCUGCCCGGuccuGGAGCUCgGg -3'
miRNA:   3'- guGUUGGUG-----------GGCGGGCC----CCUCGAGgC- -5'
29064 5' -62.6 NC_006146.1 + 138765 0.66 0.638877
Target:  5'- cCACGGCCcuggcuaACCUGCuacgugCUGGGaGAGCUUCGg -3'
miRNA:   3'- -GUGUUGG-------UGGGCG------GGCCC-CUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 139064 0.66 0.630162
Target:  5'- gGCGGCCACCauacggGCCCugguggcgcGGGGGGCUgUa -3'
miRNA:   3'- gUGUUGGUGGg-----CGGG---------CCCCUCGAgGc -5'
29064 5' -62.6 NC_006146.1 + 108295 0.66 0.630162
Target:  5'- aUACGugCGUCUGCCaCGGGGAGaagauCUCCa -3'
miRNA:   3'- -GUGUugGUGGGCGG-GCCCCUC-----GAGGc -5'
29064 5' -62.6 NC_006146.1 + 64222 0.66 0.630162
Target:  5'- aACAGCCccagggauCCCguGCCCGGGGAGaggaCGg -3'
miRNA:   3'- gUGUUGGu-------GGG--CGGGCCCCUCgag-GC- -5'
29064 5' -62.6 NC_006146.1 + 57792 0.66 0.630162
Target:  5'- gGCAGCCGCCCugcauguuGCCaCGcuuuucgaggccGGGuGCUCCa -3'
miRNA:   3'- gUGUUGGUGGG--------CGG-GC------------CCCuCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 56982 0.66 0.630162
Target:  5'- gACGGCCACCUGCUgGuuaagauagaaGGGGGCcauggCCGa -3'
miRNA:   3'- gUGUUGGUGGGCGGgC-----------CCCUCGa----GGC- -5'
29064 5' -62.6 NC_006146.1 + 48145 0.66 0.630162
Target:  5'- -cCAGCC-CCCGCUCGuaccccucguaGGGGGcCUCCa -3'
miRNA:   3'- guGUUGGuGGGCGGGC-----------CCCUC-GAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.