miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 24689 0.66 0.65919
Target:  5'- cCAUGGCCGCCgCuuacCCCGGaGGAGC-CCa -3'
miRNA:   3'- -GUGUUGGUGG-Gc---GGGCC-CCUCGaGGc -5'
29064 5' -62.6 NC_006146.1 + 49984 0.66 0.653392
Target:  5'- uUugGACCGgCCGCCacauugugcacgaaGGGGGGCaCCa -3'
miRNA:   3'- -GugUUGGUgGGCGGg-------------CCCCUCGaGGc -5'
29064 5' -62.6 NC_006146.1 + 102804 0.66 0.649524
Target:  5'- gGCuGGCCGCCCaCCUGgaucgcgcGGGGGCUCUGc -3'
miRNA:   3'- gUG-UUGGUGGGcGGGC--------CCCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 34511 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 35533 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 35440 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 35347 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33675 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33768 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33861 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 35068 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 35161 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34604 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 35254 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34418 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34325 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34232 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34139 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 34046 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33953 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.