miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 45964 0.71 0.394494
Target:  5'- gAC-GCUcUCUGCCCGGGGcAGCUCCu -3'
miRNA:   3'- gUGuUGGuGGGCGGGCCCC-UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 156798 0.71 0.394494
Target:  5'- aGCAGCCccgacauCCCGCCCuGGGGA-CUCUa -3'
miRNA:   3'- gUGUUGGu------GGGCGGG-CCCCUcGAGGc -5'
29064 5' -62.6 NC_006146.1 + 137681 0.7 0.401733
Target:  5'- gGCGGCCACCCGgcugcCCCGGagcaccaGGAGCacCCGg -3'
miRNA:   3'- gUGUUGGUGGGC-----GGGCC-------CCUCGa-GGC- -5'
29064 5' -62.6 NC_006146.1 + 33424 0.7 0.402543
Target:  5'- cCGCugcGCCG-CCGCUCGGuccuGGGGCUCCGg -3'
miRNA:   3'- -GUGu--UGGUgGGCGGGCC----CCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 67327 0.7 0.402543
Target:  5'- gCugAGCCcgGCCCagGCCCGGGcGAGC-CCa -3'
miRNA:   3'- -GugUUGG--UGGG--CGGGCCC-CUCGaGGc -5'
29064 5' -62.6 NC_006146.1 + 33302 0.7 0.402543
Target:  5'- cCGCugcGCCG-CCGCUCGGuccuGGGGCUCCGg -3'
miRNA:   3'- -GUGu--UGGUgGGCGGGCC----CCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 1195 0.7 0.402543
Target:  5'- aGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- gUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 2127 0.7 0.402543
Target:  5'- aGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- gUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 3059 0.7 0.402543
Target:  5'- aGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- gUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 168294 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 169226 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 167362 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 170157 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 127665 0.7 0.427304
Target:  5'- gGCuAUCugCUGCuCCaGGGGGGCUCCu -3'
miRNA:   3'- gUGuUGGugGGCG-GG-CCCCUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 62504 0.69 0.452945
Target:  5'- aGCAG-CACCUgGCCCuGGGGGGCUgCGu -3'
miRNA:   3'- gUGUUgGUGGG-CGGG-CCCCUCGAgGC- -5'
29064 5' -62.6 NC_006146.1 + 137708 0.69 0.452945
Target:  5'- -cCGGCCuCCC-CCCGGGGuGC-CCGg -3'
miRNA:   3'- guGUUGGuGGGcGGGCCCCuCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 137559 0.69 0.459048
Target:  5'- gGCGGCCACCCGgcugcCCCGGagcacccggaccccGGAGCcCCa -3'
miRNA:   3'- gUGUUGGUGGGC-----GGGCC--------------CCUCGaGGc -5'
29064 5' -62.6 NC_006146.1 + 63254 0.69 0.461676
Target:  5'- gGCAAUgGCCU--CCGGGGGGCUCUa -3'
miRNA:   3'- gUGUUGgUGGGcgGGCCCCUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 165981 0.69 0.461676
Target:  5'- gCACGGCCACCCGaCagCGaGGGuccGGCUCUGu -3'
miRNA:   3'- -GUGUUGGUGGGC-Gg-GC-CCC---UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 101942 0.69 0.470496
Target:  5'- aGCGGCUcuGCCCuGCCCccuGGcuaGGGGCUCCGg -3'
miRNA:   3'- gUGUUGG--UGGG-CGGG---CC---CCUCGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.